{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":["archivers/brotli","archivers/libdeflate","archivers/liblz4","archivers/zstd","biology/htslib","devel/binutils","devel/cmake-core","devel/gettext-runtime","devel/gmake","devel/jsoncpp","devel/libunistring","devel/libuv","dns/libidn2","dns/libpsl","ftp/curl","lang/gcc14","math/gmp","math/mpc","math/mpfr","ports-mgmt/pkg","print/indexinfo","science/hdf5","science/libaec","security/libssh2","security/rhash","textproc/expat2","www/libnghttp2"],"categories":["biology"],"comment":"Quantify abundances of transcripts from RNA-Seq data","compare":"/compare/kallisto/index.json","dependentCount":null,"description":"Kallisto is a program for quantifying abundances of transcripts from RNA-Seq\ndata, or more generally of target sequences using high-throughput sequencing\nreads. It is based on the novel idea of pseudoalignment for rapidly determining\nthe compatibility of reads with targets, without the need for alignment.","flavors":[],"html":"https://daemonports.org/biology/kallisto/","kind":"port","lastUpdate":"2026-10-08T08:42:17-05:00","license":["BSD2CLAUSE"],"maintainer":"ports@FreeBSD.org","name":"kallisto","newest":true,"newestVersion":"0.52.0","noVulnData":false,"origin":"biology/kallisto","otherSystems":[{"maintainer":"bacon@NetBSD.org","origin":"biology/kallisto","path":"/netbsd/biology/kallisto/","system":"NetBSD","version":"0.51.1"},{"maintainer":"jwb@FreeBSD.org","origin":"biology/kallisto","path":"/dragonfly/biology/kallisto/","system":"DragonFly","version":"0.48.0_3,1"},{"maintainer":"jwb@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/kallisto","path":"","system":"GhostBSD","version":"0.52.0,1"}],"packages":[{"repo":"FreeBSD:14:latest","versions":["0.52.0,1","0.52.0,1","-","-","-"]},{"repo":"FreeBSD:14:quarterly","versions":["0.52.0,1","0.52.0,1","n/a","-","-"]},{"repo":"FreeBSD:15:latest","versions":["0.52.0,1","0.52.0,1","n/a","-","-"]},{"repo":"FreeBSD:15:quarterly","versions":["0.52.0,1","0.52.0,1","n/a","n/a","n/a"]},{"repo":"FreeBSD:16:latest","versions":["0.52.0,1","0.52.0,1","n/a","n/a","n/a"]},{"repo":"FreeBSD:16:quarterly","versions":["n/a","n/a","n/a","n/a","n/a"]}],"pkgName":"kallisto-0.52.0,1","related":null,"repository":"FreeBSD ports","requiredBy":["biology/biostar-tools","biology/rna-seq"],"requiredByCount":2,"runDepends":["archivers/brotli","archivers/libdeflate","archivers/liblz4","archivers/zstd","biology/htslib","devel/binutils","devel/libunistring","dns/libidn2","dns/libpsl","ftp/curl","lang/gcc14","math/gmp","math/mpc","math/mpfr","print/indexinfo","science/hdf5","science/libaec","security/libssh2","www/libnghttp2"],"status":null,"system":"freebsd","systemLabel":"FreeBSD","version":"0.52.0,1","versions":null,"vulnerabilities":null,"www":"https://pachterlab.github.io/kallisto/about.html"}
