{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":["archivers/liblz4","archivers/zstd","biology/viennarna","databases/sqlite3","devel/autoconf","devel/autoconf-switch","devel/automake","devel/binutils","devel/gettext-runtime","devel/gmake","devel/libedit","devel/libtool","devel/m4","devel/pkgconf","graphics/giflib","graphics/jpeg-turbo","graphics/png","lang/gcc14","lang/perl5.42","lang/tcl86","math/blas","math/gmp","math/gsl","math/lapack","math/libtommath","math/mpc","math/mpfr","print/indexinfo","science/dlib-cpp","x11/libICE","x11/libSM","x11/libX11","x11/libXau","x11/libXdmcp","x11/libXext","x11/libxcb","x11/xorgproto"],"categories":["biology"],"comment":"LocARNA provides several tools for the structural analysis of RNA","compare":null,"dependentCount":null,"description":"LocARNA is a collection of alignment tools for the structural analysis of RNA.\nGiven a set of RNA sequences, LocARNA simultaneously aligns and predicts common\nstructures for your RNAs. In this way, LocARNA performs Sankoff-like alignment\nand is in particular suited for analyzing sets of related RNAs without known\ncommon structure.\n\nLocARNA distinguishes itself from many other Sankoff-style multiple alignment\nprograms by its performance and low memory complexity, high accuracy, and\nrichness of features. As unique features, it offers structure-local alignment,\nflexible structure and anchor constraints, and provides efficient computation of\nreliabilities in sequence-structure alignment. The package offers a robust core\nof features and is used as experimental platform for the incorporation of new\nfeatures in RNA sequence-structure alignment.","flavors":[],"html":"https://daemonports.org/biology/locarna/","kind":"port","lastUpdate":null,"license":["GPLv3"],"maintainer":"yuri@FreeBSD.org","name":"locarna","newest":true,"newestVersion":"2.0.1","noVulnData":false,"origin":"biology/locarna","otherSystems":[{"maintainer":"yuri@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/locarna","path":"","system":"HardenedBSD","version":"2.0.1"},{"maintainer":"yuri@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/locarna","path":"","system":"GhostBSD","version":"2.0.1"}],"packages":[{"repo":"FreeBSD:14:latest","versions":["2.0.1","2.0.1","-","2.0.0_1","2.0.1"]},{"repo":"FreeBSD:14:quarterly","versions":["2.0.1","2.0.1","n/a","2.0.0_1","2.0.1"]},{"repo":"FreeBSD:15:latest","versions":["2.0.1","2.0.1","n/a","-","-"]},{"repo":"FreeBSD:15:quarterly","versions":["2.0.1","2.0.1","n/a","n/a","n/a"]},{"repo":"FreeBSD:16:latest","versions":["2.0.1","2.0.1","n/a","n/a","n/a"]},{"repo":"FreeBSD:16:quarterly","versions":["n/a","n/a","n/a","n/a","n/a"]}],"pkgName":"locarna-2.0.1","related":null,"repository":"FreeBSD ports","requiredBy":[],"requiredByCount":0,"runDepends":["lang/perl5.42","math/gmp","math/gsl","math/mpfr","print/indexinfo"],"status":null,"system":"freebsd","systemLabel":"FreeBSD","version":"2.0.1","versions":null,"vulnerabilities":null,"www":"https://github.com/s-will/LocARNA"}