{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["biology","science"],"comment":"Genome annotation tool","compare":null,"dependentCount":null,"description":"AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences.\n\nAUGUSTUS usually belongs to the most accurate programs for the species it is\ntrained for. Often it is the most accurate ab initio program. For example, at\nthe independent gene finder assessment (EGASP) on the human ENCODE regions\nAUGUSTUS was the most accurate gene finder among the tested ab initio programs.\nAt the more recent nGASP (worm), it was among the best in the ab initio and\ntranscript-based categories. See accuracy statistics for further details.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/augustus/","kind":"port","lastUpdate":null,"license":["GPLv3"],"licenses":["GPL-3.0-only"],"maintainer":"yuri@FreeBSD.org","name":"augustus-gene-prediction","newest":true,"newestVersion":"3.5.0","noVulnData":false,"origin":"biology/augustus","otherSystems":[{"maintainer":"yuri@FreeBSD.org","newest":true,"origin":"biology/augustus","path":"/biology/augustus/","system":"FreeBSD","updated":"2026-09-29","version":"3.5.0_18"},{"maintainer":"yuri@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/augustus","path":"","system":"HardenedBSD","version":"3.5.0_18"},{"maintainer":"yuri@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/augustus","path":"","system":"GhostBSD","version":"3.5.0_18"}],"packages":null,"pkgName":"augustus-gene-prediction-3.5.0_18","related":null,"repository":"DPorts","requiredBy":[],"requiredByCount":0,"runDepends":["biology/bamtools","biology/htslib","biology/samtools","databases/mysql++","databases/mysql84-client","databases/sqlite3","devel/boost-libs","lang/perl5.42","lang/python312","math/gsl","math/lp_solve","math/suitesparse-colamd"],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"3.5.0_18","versions":[{"date":"2026-11-11","version":"3.5.0"}],"vulnerabilities":null,"www":"http://bioinf.uni-greifswald.de/webaugustus/"}