{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["biology","science"],"comment":"BAsic Rapid Ribosomal RNA Predictor","compare":null,"dependentCount":null,"description":"Barrnap predicts the location of ribosomal RNA genes in genomes. It supports\nbacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), metazoan mitochondria\n(12S,16S) and eukaryotes (5S,5.8S,28S,18S).\n\nIt takes FASTA DNA sequence as input, and write GFF3 as output. It uses the new\nnhmmer tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style.\nMultithreading is supported and one can expect roughly linear speed-ups with\nmore CPUs.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/barrnap/","kind":"port","lastUpdate":null,"license":["GPLv3"],"maintainer":"yuri@FreeBSD.org","name":"barrnap","newest":false,"newestVersion":"1.10.6","noVulnData":false,"origin":"biology/barrnap","otherSystems":[{"maintainer":"yuri@FreeBSD.org","newest":true,"origin":"biology/barrnap","path":"/biology/barrnap/","system":"FreeBSD","version":"1.10.6"},{"maintainer":"yuri@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/barrnap","path":"","system":"HardenedBSD","version":"1.10.6"},{"maintainer":"yuri@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/barrnap","path":"","system":"GhostBSD","version":"1.10.6"}],"packages":null,"pkgName":"barrnap-0.9","related":null,"repository":"DPorts","requiredBy":[],"requiredByCount":0,"runDepends":["biology/bedtools","biology/hmmer","lang/perl5.36"],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"0.9","versions":null,"vulnerabilities":null,"www":"https://github.com/tseemann/barrnap"}