{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["biology"],"comment":"Burrows-Wheeler sequence aligner","compare":"/compare/bwa/index.json","dependentCount":null,"description":"BWA is a software package for mapping DNA sequences against a large\nreference genome, such as the human genome. It consists of three\nalgorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is\ndesigned for Illumina sequence reads up to 100bp, while the other two\nare for longer sequences ranging from 70bp to a few megabases. BWA-MEM\nand BWA-SW share similar features such as the support of long reads\nand chimeric alignment, but BWA-MEM, which is the latest, is generally\nrecommended, as it is faster and more accurate. BWA-MEM also has\nbetter performance than BWA-backtrack for 70-100bp Illumina reads.\n\nFor all algorithms, BWA first needs to construct the FM-index for the\nreference genome (the \"bwa index\" command). Alignment algorithms are\ninvoked with different sub-commands: \"bwa aln/samse/sampe\" for\nBWA-backtrack, \"bwa bwasw\" for BWA-SW, and \"bwa mem\" for the BWA-MEM\nalgorithm.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/bwa/","kind":"port","lastUpdate":null,"license":["GPLv3"],"maintainer":"alster@vinterdalen.se","name":"bwa","newest":true,"newestVersion":"0.7.19","noVulnData":false,"origin":"biology/bwa","otherSystems":[{"maintainer":"alven@FreeBSD.org","newest":true,"origin":"biology/bwa","path":"/biology/bwa/","system":"FreeBSD","version":"0.7.19"},{"maintainer":"bacon@NetBSD.org","origin":"biology/bwa","path":"/netbsd/biology/bwa/","system":"NetBSD","version":"0.7.17nb7","vulnCount":2},{"maintainer":"alven@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/bwa","path":"","system":"HardenedBSD","version":"0.7.19"},{"maintainer":"alven@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/bwa","path":"","system":"GhostBSD","version":"0.7.19"}],"packages":null,"pkgName":"bwa-0.7.19","related":null,"repository":"DPorts","requiredBy":[],"requiredByCount":0,"runDepends":["lang/perl5.36"],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"0.7.19","versions":null,"vulnerabilities":null,"www":"https://bio-bwa.sourceforge.net/"}