{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["biology","python"],"comment":"Quality assessment tool for the microbial genomes","compare":null,"dependentCount":null,"description":"CheckM provides a set of tools for assessing the quality of genomes recovered\nfrom isolates, single cells, or metagenomes.\n\nIt provides robust estimates of genome completeness and contamination by using\ncollocated sets of genes that are ubiquitous and single-copy within a\nphylogenetic lineage.\n\nAssessment of genome quality can also be examined using plots depicting key\ngenomic characteristics (e.g., GC, coding density) which highlight sequences\noutside the expected distributions of a typical genome. CheckM also provides\ntools for identifying genome bins that are likely candidates for merging based\non marker set compatibility, similarity in genomic characteristics, and\nproximity within a reference genome tree.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/checkm/","kind":"port","lastUpdate":null,"license":["GPLv3"],"maintainer":"yuri@FreeBSD.org","name":"CheckM","newest":false,"newestVersion":null,"noVulnData":false,"origin":"biology/checkm","otherSystems":[],"packages":null,"pkgName":"CheckM-1.2.3_1","related":null,"repository":"DPorts","requiredBy":[],"requiredByCount":0,"runDepends":["biology/py-pysam","lang/python311","math/py-matplotlib","math/py-numpy","science/py-DendroPy","science/py-scipy"],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"1.2.3_1","versions":null,"vulnerabilities":null,"www":"https://ecogenomics.github.io/CheckM/"}