{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["biology"],"comment":"Profile hidden Markov models for biological sequence analysis","compare":"/compare/hmmer/index.json","dependentCount":null,"description":"HMMER is an implementation of profile hidden Markov model methods for\nsensitive searches of biological sequence databases using multiple sequence\nalignments as queries.\n\nGiven a multiple sequence alignment as input, HMMER builds a statistical\nmodel called a \"hidden Markov model\" which can then be used as a query into\na sequence database to find (and/or align) additional homologues of the\nsequence family.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/hmmer/","kind":"port","lastUpdate":null,"license":["BSD3CLAUSE"],"maintainer":"mzaki@e-mail.ne.jp","name":"hmmer","newest":true,"newestVersion":"3.4","noVulnData":false,"origin":"biology/hmmer","otherSystems":[{"maintainer":"mzaki@e-mail.ne.jp","newest":true,"origin":"biology/hmmer","path":"/biology/hmmer/","system":"FreeBSD","updated":"2026-10-15","version":"3.4"},{"maintainer":"Senthil Kumar M \u003csenthil.murugapiran@gmail.com\u003e","noVulnData":true,"origin":"biology/hmmer","path":"/openbsd/biology/hmmer/","system":"OpenBSD","version":"3.1beta2p0"},{"maintainer":"pkgsrc-users@NetBSD.org","origin":"biology/hmmer","path":"/netbsd/biology/hmmer/","system":"NetBSD","version":"3.0nb1"},{"maintainer":"mzaki@e-mail.ne.jp","newest":true,"noVulnData":true,"origin":"biology/hmmer","path":"","system":"HardenedBSD","version":"3.4"},{"maintainer":"mzaki@e-mail.ne.jp","newest":true,"noVulnData":true,"origin":"biology/hmmer","path":"","system":"GhostBSD","version":"3.4"}],"packages":null,"pkgName":"hmmer-3.4","related":null,"repository":"DPorts","requiredBy":["biology/barrnap"],"requiredByCount":1,"runDepends":[],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"3.4","versions":null,"vulnerabilities":null,"www":"http://hmmer.org/"}