{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["biology"],"comment":"Search sequence databases for structural RNA homologs","compare":null,"dependentCount":null,"description":"Infernal, standing for \"INFERence of RNA ALignment\", is a tool for searching\nDNA sequence database for RNA structure and sequence similarities.\n\nIt is based on Covariance Model (CM), which scores a combination of sequence\nconsensus and RNA secondary structure consensus, and thus is more capable of\nidentifying RNA homologs than using primary sequence profile.\n\nThe Rfam database of RNA families is based on Infernal.\n\nCitation:\nNawrocki \u0026 Eddy (2013) Infernal 1.1: 100-fold faster RNA homology searches,\nBioinformatics 29: 2933-2935.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/infernal/","kind":"port","lastUpdate":null,"license":["BSD3CLAUSE"],"maintainer":"mzaki@e-mail.ne.jp","name":"infernal","newest":true,"newestVersion":"1.1.5","noVulnData":false,"origin":"biology/infernal","otherSystems":[{"maintainer":"mzaki@e-mail.ne.jp","newest":true,"origin":"biology/infernal","path":"/biology/infernal/","system":"FreeBSD","version":"1.1.5"},{"maintainer":"mzaki@e-mail.ne.jp","newest":true,"noVulnData":true,"origin":"biology/infernal","path":"","system":"HardenedBSD","version":"1.1.5"},{"maintainer":"mzaki@e-mail.ne.jp","newest":true,"noVulnData":true,"origin":"biology/infernal","path":"","system":"GhostBSD","version":"1.1.5"}],"packages":null,"pkgName":"infernal-1.1.5","related":null,"repository":"DPorts","requiredBy":["biology/tRNAscan-SE"],"requiredByCount":1,"runDepends":[],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"1.1.5","versions":null,"vulnerabilities":null,"www":"http://eddylab.org/infernal/"}