{"added":null,"apiVersion":1,"behindSince":"2026-10-11","buildDepends":[],"categories":["biology"],"comment":"Efficient phylogenomic software by maximum likelihood","compare":null,"dependentCount":null,"description":"IQ-TREE is efficient and versatile phylogenomic software, created as the\nsuccessor of IQPNNI and TREE-PUZZLE (thus the name IQ-TREE).  Development was\nmotivated by the rapid accumulation of phylogenomic data, leading to a need for\nefficient phylogenomic software that can handle a large amount of data and\nprovide more complex models of sequence evolution. To this end, IQ-TREE can\nutilize multicore computers and distributed parallel computing to speed up the\nanalysis. IQ-TREE automatically performs checkpointing to resume an interrupted\nanalysis.\n\nAs input IQ-TREE accepts all common sequence alignment formats including PHYLIP,\nFASTA, Nexus, Clustal and MSF. As output IQ-TREE will write a self-readable\nreport file (name suffix .iqtree), a NEWICK tree file (.treefile) which can be\nvisualized by tree viewer programs such as FigTree, Dendroscope or iTOL.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/iqtree/","kind":"port","lastUpdate":null,"license":["GPLv2"],"maintainer":"jrm@FreeBSD.org","name":"iqtree","newest":false,"newestVersion":"3.1.4","noVulnData":false,"origin":"biology/iqtree","otherSystems":[{"maintainer":"jrm@FreeBSD.org","newest":true,"origin":"biology/iqtree","path":"/biology/iqtree/","system":"FreeBSD","updated":"2026-10-11","version":"3.1.4"},{"behindSince":"2026-10-11","maintainer":"jrm@FreeBSD.org","noVulnData":true,"origin":"biology/iqtree","path":"","system":"HardenedBSD","version":"3.1.3"},{"behindSince":"2026-10-11","maintainer":"jrm@FreeBSD.org","noVulnData":true,"origin":"biology/iqtree","path":"","system":"GhostBSD","version":"3.1.3"}],"packages":null,"pkgName":"iqtree-2.3.5","related":null,"repository":"DPorts","requiredBy":[],"requiredByCount":0,"runDepends":["devel/boost-libs"],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"2.3.5","versions":null,"vulnerabilities":null,"www":"http://www.iqtree.org/"}