{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["biology"],"comment":"Quantify abundances of transcripts from RNA-Seq data","compare":"/compare/kallisto/index.json","dependentCount":null,"description":"Kallisto is a program for quantifying abundances of transcripts from RNA-Seq\ndata, or more generally of target sequences using high-throughput sequencing\nreads. It is based on the novel idea of pseudoalignment for rapidly determining\nthe compatibility of reads with targets, without the need for alignment.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/kallisto/","kind":"port","lastUpdate":null,"license":["BSD2CLAUSE"],"maintainer":"jwb@FreeBSD.org","name":"kallisto","newest":false,"newestVersion":"0.52.0","noVulnData":false,"origin":"biology/kallisto","otherSystems":[{"maintainer":"ports@FreeBSD.org","newest":true,"origin":"biology/kallisto","path":"/biology/kallisto/","system":"FreeBSD","updated":"2026-10-08","version":"0.52.0,1"},{"maintainer":"bacon@NetBSD.org","origin":"biology/kallisto","path":"/netbsd/biology/kallisto/","system":"NetBSD","version":"0.51.1"},{"maintainer":"jwb@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/kallisto","path":"","system":"GhostBSD","version":"0.52.0,1"}],"packages":null,"pkgName":"kallisto-0.48.0_3,1","related":null,"repository":"DPorts","requiredBy":[],"requiredByCount":0,"runDepends":["biology/htslib","science/hdf5","science/libaec"],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"0.48.0_3,1","versions":null,"vulnerabilities":null,"www":"https://pachterlab.github.io/kallisto/about.html"}
