{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["biology"],"comment":"PacBio BAM C++ library, with SWIG bindings","compare":null,"dependentCount":null,"description":"As of the 3.0 release of SMRTanalysis, PacBio is embracing the industry\nstandard BAM format for (both aligned and unaligned) basecall data files. We\nhave also formulated a BAM companion file format (bam.pbi) enabling fast access\nto a richer set of per-read information as well as compatibility for software\nbuilt around the legacy cmp.h5 format.\n\nThe pbbam software package provides components to create, query, \u0026 edit PacBio\nBAM files and associated indices. These components include a core C++ library,\nbindings for additional languages, and command-line utilities.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/pbbam/","kind":"port","lastUpdate":null,"license":["BSD3CLAUSE"],"maintainer":"ports@FreeBSD.org","name":"pbbam","newest":true,"newestVersion":"0.18.0","noVulnData":false,"origin":"biology/pbbam","otherSystems":[{"maintainer":"ports@FreeBSD.org","newest":true,"origin":"biology/pbbam","path":"/biology/pbbam/","system":"FreeBSD","updated":"2026-09-29","version":"0.18.0_14"},{"maintainer":"ports@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/pbbam","path":"","system":"HardenedBSD","version":"0.18.0_14"},{"maintainer":"ports@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/pbbam","path":"","system":"GhostBSD","version":"0.18.0_13"}],"packages":null,"pkgName":"pbbam-0.18.0_11","related":null,"repository":"DPorts","requiredBy":[],"requiredByCount":0,"runDepends":["biology/htslib","devel/boost-libs","lang/python311"],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"0.18.0_11","versions":null,"vulnerabilities":null,"www":"https://github.com/PacificBiosciences/pbbam"}