{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["biology","python"],"comment":"Biological Observation Matrix (BIOM) Format Project","compare":null,"dependentCount":null,"description":"The BIOM file format (canonically pronounced biome) is designed to be a\ngeneral-use format for representing biological sample by observation contingency\ntables. BIOM is a recognized standard for the Earth Microbiome Project and is a\nGenomics Standards Consortium supported project.\n\nThe BIOM format is designed for general use in broad areas of comparative\n-omics. For example, in marker-gene surveys, the primary use of this format is\nto represent OTU tables: the observations in this case are OTUs and the matrix\ncontains counts corresponding to the number of times each OTU is observed in\neach sample. With respect to metagenome data, this format would be used to\nrepresent metagenome tables: the observations in this case might correspond to\nSEED subsystems, and the matrix would contain counts corresponding to the number\nof times each subsystem is observed in each metagenome. Similarly, with respect\nto genome data, this format may be used to represent a set of genomes: the\nobservations in this case again might correspond to SEED subsystems, and the\ncounts would correspond to the number of times each subsystem is observed in\neach genome.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/py-biom-format/","kind":"port","lastUpdate":null,"license":["BSD3CLAUSE"],"maintainer":"jrm@FreeBSD.org","name":"py311-biom-format","newest":true,"newestVersion":"2.1.16","noVulnData":false,"origin":"biology/py-biom-format","otherSystems":[{"maintainer":"jrm@FreeBSD.org","newest":true,"origin":"biology/py-biom-format","path":"/biology/py-biom-format/","system":"FreeBSD","version":"2.1.16_3"},{"maintainer":"jrm@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/py-biom-format","path":"","system":"HardenedBSD","version":"2.1.16_3"},{"maintainer":"jrm@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/py-biom-format","path":"","system":"GhostBSD","version":"2.1.16_3"}],"packages":null,"pkgName":"py311-biom-format-2.1.16_1","related":null,"repository":"DPorts","requiredBy":["biology/py-scikit-bio"],"requiredByCount":1,"runDepends":["devel/py-click","lang/python311","math/py-numpy","math/py-pandas","science/py-h5py","science/py-scipy"],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"2.1.16_1","versions":null,"vulnerabilities":null,"www":"https://biom-format.org/"}