{"added":null,"apiVersion":1,"behindSince":"2026-10-22","buildDepends":[],"categories":["biology","python"],"comment":"Efficient pythonic random access to fasta subsequences","compare":null,"dependentCount":null,"description":"FASTA is a format to exchange generic information, partial or of the entire\norganism.\n\nA function \"faidx\" (FAsta InDeX) creates a small flat index file \".fai\" allowing\nfor fast random access to any subsequence in the indexed FASTA file, while\nloading a minimal amount of the file in to memory. This python module implements\npure Python classes for indexing, retrieval, and in-place modification of FASTA\nfiles using a samtools compatible index. The pyfaidx module is API compatible\nwith the pygr seqdb module. A command-line script \"faidx\" is installed alongside\nthe pyfaidx module, and facilitates complex manipulation of FASTA files without\nany programming knowledge.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/py-pyfaidx/","kind":"port","lastUpdate":null,"license":["BSD3CLAUSE"],"maintainer":"yuri@FreeBSD.org","name":"py311-pyfaidx","newest":false,"newestVersion":"0.9.1","noVulnData":false,"origin":"biology/py-pyfaidx","otherSystems":[{"maintainer":"yuri@FreeBSD.org","newest":true,"origin":"biology/py-pyfaidx","path":"/biology/py-pyfaidx/","system":"FreeBSD","updated":"2026-10-22","version":"0.9.1"},{"behindSince":"2026-10-22","maintainer":"yuri@FreeBSD.org","noVulnData":true,"origin":"biology/py-pyfaidx","path":"","system":"HardenedBSD","version":"0.9.0.4"},{"behindSince":"2026-10-22","maintainer":"yuri@FreeBSD.org","noVulnData":true,"origin":"biology/py-pyfaidx","path":"","system":"GhostBSD","version":"0.9.0.4"}],"packages":null,"pkgName":"py311-pyfaidx-0.5.9.5_1","related":null,"repository":"DPorts","requiredBy":["biology/py-gffutils"],"requiredByCount":1,"runDepends":["devel/py-six","lang/python311"],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"0.5.9.5_1","versions":null,"vulnerabilities":null,"www":"https://github.com/mdshw5/pyfaidx"}