{"added":null,"apiVersion":1,"behindSince":"2026-09-10","buildDepends":[],"categories":["biology","python"],"comment":"Python module for reading, manipulating and writing genomic data sets","compare":null,"dependentCount":null,"description":"pysam is a lightweight wrapper of the htslib C-API and provides facilities to\nread and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access\nto the command line functionality of the samtools and bcftools packages. The\nmodule supports compression and random access through indexing.\n\nThis module provides a low-level wrapper around the htslib C-API as using\ncython and a high-level API for convenient access to the data within standard\ngenomic file formats.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/py-pysam/","kind":"port","lastUpdate":null,"license":["MIT"],"maintainer":"yuri@FreeBSD.org","name":"py311-pysam","newest":false,"newestVersion":"0.24.1","noVulnData":false,"origin":"biology/py-pysam","otherSystems":[{"maintainer":"yuri@FreeBSD.org","newest":true,"origin":"biology/py-pysam","path":"/biology/py-pysam/","system":"FreeBSD","updated":"2026-09-10","version":"0.24.1"},{"maintainer":"yuri@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/py-pysam","path":"","system":"HardenedBSD","version":"0.24.1"},{"maintainer":"yuri@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/py-pysam","path":"","system":"GhostBSD","version":"0.24.1"}],"packages":null,"pkgName":"py311-pysam-0.23.0_1","related":null,"repository":"DPorts","requiredBy":["biology/checkm","biology/py-crossmap","biology/py-deeptools","biology/py-htseq"],"requiredByCount":4,"runDepends":["biology/bcftools","biology/htslib","biology/samtools","lang/cython","lang/python311"],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"0.23.0_1","versions":null,"vulnerabilities":null,"www":"https://github.com/pysam-developers/pysam"}