{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["biology"],"comment":"C++ implementation of the partial order alignment (POA) algorithm","compare":null,"dependentCount":null,"description":"Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA)\nalgorithm (as described in 10.1093/bioinformatics/18.3.452) which is used to\ngenerate consensus sequences. It supports three alignment modes: local\n(Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment (overlap),\nand three gap modes: linear, affine and convex (piecewise affine). It also\nsupports Intel SSE4.1+ and AVX2 vectorization (marginally faster due to high\nlatency shifts), SIMDe and dispatching.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/spoa/","kind":"port","lastUpdate":null,"license":["MIT"],"maintainer":"yuri@FreeBSD.org","name":"spoa","newest":false,"newestVersion":"4.1.5","noVulnData":false,"origin":"biology/spoa","otherSystems":[{"maintainer":"yuri@FreeBSD.org","newest":true,"origin":"biology/spoa","path":"/biology/spoa/","system":"FreeBSD","version":"4.1.5"},{"maintainer":"yuri@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/spoa","path":"","system":"HardenedBSD","version":"4.1.5"},{"maintainer":"yuri@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/spoa","path":"","system":"GhostBSD","version":"4.1.5"}],"packages":null,"pkgName":"spoa-4.1.0","related":null,"repository":"DPorts","requiredBy":[],"requiredByCount":0,"runDepends":["devel/cereal","devel/cpu_features"],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"4.1.0","versions":null,"vulnerabilities":null,"www":"https://github.com/rvaser/spoa"}