{"added":null,"apiVersion":1,"behindSince":"2026-08-27","buildDepends":[],"categories":["biology"],"comment":"High-performance read alignment, quantification and mutation discovery","compare":"/compare/subread/index.json","dependentCount":null,"description":"The Subread package comprises a suite of software programs for processing\nnext-gen sequencing read data including:\n\n    Subread: a general-purpose read aligner which can align both genomic\n    DNA-seq and RNA-seq reads. It can also be used to discover genomic\n    mutations including short indels and structural variants.\n\n    Subjunc: a read aligner developed for aligning RNA-seq reads and for the\n    detection of exon-exon junctions. Gene fusion events can be detected as\n    well.\n\n    featureCounts: a software program developed for counting reads to genomic\n    features such as genes, exons, promoters and genomic bins.\n\n    Sublong: a long-read aligner that is designed based on seed-and-vote.\n\n    exactSNP: a SNP caller that discovers SNPs by testing signals against local\n    background noises.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/subread/","kind":"port","lastUpdate":null,"license":["GPLv3"],"maintainer":"jwb@FreeBSD.org","name":"subread","newest":false,"newestVersion":"2.1.1","noVulnData":false,"origin":"biology/subread","otherSystems":[{"maintainer":"ports@FreeBSD.org","newest":true,"origin":"biology/subread","path":"/biology/subread/","system":"FreeBSD","updated":"2026-10-08","version":"2.1.1"},{"behindSince":"2026-08-27","maintainer":"bacon@NetBSD.org","matchedBy":"name","origin":"wip/subread","path":"/netbsd/wip/subread/","system":"NetBSD","version":"2.1.0"},{"maintainer":"jwb@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/subread","path":"","system":"HardenedBSD","version":"2.1.1"},{"maintainer":"jwb@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/subread","path":"","system":"GhostBSD","version":"2.1.1"}],"packages":null,"pkgName":"subread-2.1.0","related":null,"repository":"DPorts","requiredBy":[],"requiredByCount":0,"runDepends":["devel/libsysinfo"],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"2.1.0","versions":null,"vulnerabilities":null,"www":"https://subread.sourceforge.net/"}