{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["biology"],"comment":"Trim adapter sequences from Illumina data using heuristic rules","compare":"/compare/trimadap/index.json","dependentCount":null,"description":"Trimadap is a small tool to trim adapter sequences from Illumina data. It\nperforms SSE2-SW between each read and each adapter sequence and identifies\nadapter sequences with a few heuristic rules which can be found in the\nta_trim1() function in trimadap-mt.c. The default adapters it uses are included\nin illumina.txt. These are typical Illumina adapters from paired-end\nsequencing.","flavors":[],"html":"https://daemonports.org/dragonfly/biology/trimadap/","kind":"port","lastUpdate":null,"license":["MIT"],"maintainer":"jwb@FreeBSD.org","name":"trimadap","newest":true,"newestVersion":"0.1.4","noVulnData":false,"origin":"biology/trimadap","otherSystems":[{"maintainer":"ports@FreeBSD.org","newest":true,"origin":"biology/trimadap","path":"/biology/trimadap/","system":"FreeBSD","updated":"2026-10-08","version":"0.1.4"},{"maintainer":"bacon@NetBSD.org","matchedBy":"name","newest":true,"origin":"wip/trimadap","path":"/netbsd/wip/trimadap/","system":"NetBSD","version":"0.1.4"},{"maintainer":"jwb@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/trimadap","path":"","system":"HardenedBSD","version":"0.1.4"},{"maintainer":"jwb@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/trimadap","path":"","system":"GhostBSD","version":"0.1.4"}],"packages":null,"pkgName":"trimadap-0.1.4","related":null,"repository":"DPorts","requiredBy":[],"requiredByCount":0,"runDepends":[],"status":null,"system":"dragonfly","systemLabel":"DragonFly","version":"0.1.4","versions":null,"vulnerabilities":null,"www":"https://github.com/lh3/trimadap"}