{"added":null,"apiVersion":1,"behindSince":"2026-08-31","buildDepends":[],"categories":["biology"],"comment":"Bcftools plugin for mosaic chromosomal alteration analysis","compare":"/compare/bio-mocha/index.json","dependentCount":null,"description":"MoChA is a bcftools plugin released under the MIT license for mosaic\nchromosomal alteration detection and analysis from DNA microarray or\nwhole genome sequence data. It can be used both with Illumina and\nAffymetrix data. It can also be used for detection of germline copy\nnumber variants. Data can be prepared in usable file formats using the\ngtc2vcf plugin.","flavors":[],"html":"https://daemonports.org/netbsd/biology/bio-mocha/","kind":"port","lastUpdate":null,"license":["mit"],"maintainer":"bacon@NetBSD.org","name":"bio-mocha","newest":false,"newestVersion":"1.22","noVulnData":false,"origin":"biology/bio-mocha","otherSystems":[{"maintainer":"ports@FreeBSD.org","newest":true,"origin":"biology/bio-mocha","path":"/biology/bio-mocha/","system":"FreeBSD","updated":"2026-10-08","version":"1.22"},{"behindSince":"2026-08-31","maintainer":"jwb@FreeBSD.org","origin":"biology/bio-mocha","path":"/dragonfly/biology/bio-mocha/","system":"DragonFly","version":"1.20"},{"maintainer":"jwb@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/bio-mocha","path":"","system":"HardenedBSD","version":"1.22"},{"maintainer":"jwb@FreeBSD.org","newest":true,"noVulnData":true,"origin":"biology/bio-mocha","path":"","system":"GhostBSD","version":"1.22"}],"packages":[{"repo":"NetBSD 10.1 x86_64","versions":["1.20"]},{"repo":"NetBSD 10.1 aarch64","versions":["1.20"]},{"repo":"SmartOS / illumos x86_64","versions":["1.20"]},{"repo":"macOS 15 arm64","versions":["1.20"]}],"pkgName":"bio-mocha-1.20","related":["wip/bio-mocha"],"repository":"pkgsrc","requiredBy":[],"requiredByCount":0,"runDepends":["biology/bcftools","biology/htslib","lang/python313","math/R","math/gsl","shells/bash"],"status":null,"system":"netbsd","systemLabel":"NetBSD","version":"1.20","versions":null,"vulnerabilities":null,"www":"https://software.broadinstitute.org/software/mocha/"}