{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["biology","meta-pkgs"],"comment":"Core tools needed for RNA-Seq analysis","compare":"/compare/rna-seq/index.json","dependentCount":null,"description":"The rna-seq meta-package provides the core tools needed for performing\na typical RNA-Seq differential gene expression analysis, including\nadapter trimming, quality control, alignment, and identification of\ndifferentially expressed genes.  Researchers may want additional tools\nfor data manipulation, gene ontology, etc.","flavors":[],"html":"https://daemonports.org/netbsd/biology/rna-seq/","kind":"port","lastUpdate":null,"license":[],"maintainer":"bacon@NetBSD.org","name":"rna-seq","newest":true,"newestVersion":"1.3.0","noVulnData":false,"origin":"biology/rna-seq","otherSystems":[{"maintainer":"ports@FreeBSD.org","origin":"biology/rna-seq","path":"/biology/rna-seq/","system":"FreeBSD","updated":"2026-10-08","version":"0.2.0"}],"packages":[{"repo":"NetBSD 10.1 x86_64","versions":["1.3.0"]},{"repo":"NetBSD 10.1 aarch64","versions":["-"]},{"repo":"SmartOS / illumos x86_64","versions":["-"]},{"repo":"macOS 15 arm64","versions":["-"]}],"pkgName":"rna-seq-1.3.0","related":["wip/rna-seq"],"repository":"pkgsrc","requiredBy":[],"requiredByCount":0,"runDepends":["archivers/lz4","archivers/xz","archivers/zstd","biology/biolibc-tools","biology/fasda","biology/fastq-trim","biology/fastqc","biology/gffread","biology/hisat2","biology/igv","biology/kallisto","biology/rna-star","biology/samtools","biology/sra-tools","lang/python313","www/curl","www/webbrowser"],"status":null,"system":"netbsd","systemLabel":"NetBSD","version":"1.3.0","versions":null,"vulnerabilities":null,"www":null}
