{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["wip","biology"],"comment":"Lightening fast sequence read trimmer","compare":"/compare/fastq-trim/index.json","dependentCount":null,"description":"Fastq-trim is a lightening fast read trimming tool for QA of DNA\nand RNA reads prior to analyses such as RNA-Seq.  it runs in a\nfraction of the time required by popular trimmers and uses only a\nfew megabytes of RAM, so it will run almost entirely in cache.\nThe design supports adding any number of alignment functions, so\nit can be easily adapted to any trimming needs.","flavors":[],"html":"https://daemonports.org/netbsd/wip/fastq-trim/","kind":"port","lastUpdate":null,"license":["2-clause-bsd"],"maintainer":"bacon@NetBSD.org","name":"fastq-trim","newest":true,"newestVersion":"0.1.4","noVulnData":false,"origin":"wip/fastq-trim","otherSystems":[{"maintainer":"jwb@FreeBSD.org","matchedBy":"name","newest":true,"origin":"biology/fastq-trim","path":"/biology/fastq-trim/","system":"FreeBSD","version":"0.1.4"},{"maintainer":"jwb@FreeBSD.org","matchedBy":"name","newest":true,"noVulnData":true,"origin":"biology/fastq-trim","path":"","system":"HardenedBSD","version":"0.1.4"},{"maintainer":"jwb@FreeBSD.org","matchedBy":"name","newest":true,"noVulnData":true,"origin":"biology/fastq-trim","path":"","system":"GhostBSD","version":"0.1.4"}],"packages":null,"pkgName":"fastq-trim-0.1.4","related":["biology/fastq-trim"],"repository":"pkgsrc-wip","requiredBy":["wip/atac-seq","wip/biostar-tools","wip/chip-seq","wip/rna-seq"],"requiredByCount":4,"runDepends":["wip/biolibc"],"status":null,"system":"netbsd","systemLabel":"NetBSD","version":"0.1.4","versions":null,"vulnerabilities":null,"www":"https://github.com/outpaddling/Fastq-trim"}