{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["wip","biology"],"comment":"Fast, memory-efficient counting of k-mers in DNA","compare":null,"dependentCount":null,"description":"Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.\nA k-mer is a substring of length k, and counting the occurrences of all such\nsubstrings is a central step in many analyses of DNA sequence. JELLYFISH can\ncount k-mers quickly by using an efficient encoding of a hash table and by\nexploiting the \"compare-and-swap\" CPU instruction to increase parallelism.","flavors":[],"html":"https://daemonports.org/netbsd/wip/jellyfish2/","kind":"port","lastUpdate":null,"license":["gnu-gpl-v3"],"maintainer":"pkgsrc-users@NetBSD.org","name":"jellyfish","newest":false,"newestVersion":null,"noVulnData":false,"origin":"wip/jellyfish2","otherSystems":[],"packages":null,"pkgName":"jellyfish-2.2.10","related":["wip/jellyfish"],"repository":"pkgsrc-wip","requiredBy":["wip/trinity"],"requiredByCount":1,"runDepends":["devel/gettext-lib","wip/yaggo"],"status":null,"system":"netbsd","systemLabel":"NetBSD","version":"2.2.10","versions":null,"vulnerabilities":null,"www":"http://www.genome.umd.edu/jellyfish.html"}