{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["wip","biology","python"],"comment":"Plotting suite for Oxford Nanopore sequencing data and alignments","compare":null,"dependentCount":null,"description":"Plotting tool for long read sequencing data and alignments.\n\nThis script performs data extraction from Oxford Nanopore sequencing\ndata in the following formats:\n\n- fastq files (can be bgzip, bzip2 or gzip compressed)\n\n- fastq files generated by albacore, guppy or MinKNOW containing\n  additional information (can be bgzip, bzip2 or gzip compressed)\n\n- sorted bam files\n\n- sequencing_summary.txt output table generated by albacore, guppy or\n  MinKnow basecalling (can be gzip, bz2, zip and xz compressed)\n\n- fasta files (can be bgzip, bzip2 or gzip compressed)\n\nMultiple files of the same type can be offered simultaneously\n\nNanoPlot creates:\n- a statistical summary\n- a number of plots\n- a html summary file","flavors":[],"html":"https://daemonports.org/netbsd/wip/nanoplot/","kind":"port","lastUpdate":null,"license":["gnu-gpl-v3"],"maintainer":"pkgsrc-users@NetBSD.org","name":"NanoPlot","newest":false,"newestVersion":null,"noVulnData":false,"origin":"wip/nanoplot","otherSystems":[],"packages":null,"pkgName":"NanoPlot-1.38.0.20210602","related":null,"repository":"pkgsrc-wip","requiredBy":["wip/nanocomp","wip/nanopack"],"requiredByCount":2,"runDepends":["biology/py-biopython","devel/py-joblib","graphics/py-matplotlib","graphics/py-seaborn","math/py-numpy","math/py-pandas","math/py-scikit-learn","math/py-scipy","wip/nanoget","wip/nanomath"],"status":null,"system":"netbsd","systemLabel":"NetBSD","version":"1.38.0.20210602","versions":null,"vulnerabilities":null,"www":"https://github.com/wdecoster/NanoPlot"}