{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["wip","biology","python"],"comment":"Statistics for Oxford Nanopore sequencing data and alignments","compare":null,"dependentCount":null,"description":"# NanoStat\n\nCalculate various statistics from a long read sequencing dataset in\nfastq, bam or albacore sequencing summary format.\n\n#### Examples\n\nNanoStat --fastq reads.fastq.gz --outdir statreports\n\nNanoStat --summary sequencing_summary1.txt sequencing_summary2.txt \\\n\t sequencing_summary3.txt --readtype 1D2\n\nNanoStat --bam alignment.bam alignment2.bam\n\nI welcome all suggestions, bug reports, feature requests and\ncontributions. Please leave an issue\n(https://github.com/wdecoster/nanostat/issues) or open a pull request.\n\nIf you use this tool, please consider citing our publication:\nhttps://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939.","flavors":[],"html":"https://daemonports.org/netbsd/wip/nanostat/","kind":"port","lastUpdate":null,"license":["gnu-gpl-v3"],"maintainer":"pkgsrc-users@NetBSD.org","name":"NanoStat","newest":false,"newestVersion":null,"noVulnData":false,"origin":"wip/nanostat","otherSystems":[],"packages":null,"pkgName":"NanoStat-1.5.0.20210108","related":null,"repository":"pkgsrc-wip","requiredBy":["wip/nanopack"],"requiredByCount":1,"runDepends":["biology/htslib","devel/py-deprecated","wip/nanoget","wip/nanomath","wip/py-pysam"],"status":null,"system":"netbsd","systemLabel":"NetBSD","version":"1.5.0.20210108","versions":null,"vulnerabilities":null,"www":"https://github.com/wdecoster/nanostat"}