{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["wip","biology"],"comment":"Python module for reading, manipulating and writing genomic data sets","compare":null,"dependentCount":null,"description":"pysam is a lightweight wrapper of the htslib C-API and provides facilities to\nread and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access\nto the command line functionality of the samtools and bcftools packages. The\nmodule supports compression and random access through indexing.\nThis module provides a low-level wrapper around the htslib C-API as using\ncython and a high-level API for convenient access to the data within standard\ngenomic file formats.","flavors":[],"html":"https://daemonports.org/netbsd/wip/py-pysam/","kind":"port","lastUpdate":null,"license":["mit"],"maintainer":"bacon@NetBSD.org","name":"pysam","newest":false,"newestVersion":null,"noVulnData":false,"origin":"wip/py-pysam","otherSystems":[],"packages":null,"pkgName":"pysam-0.21.0","related":null,"repository":"pkgsrc-wip","requiredBy":["wip/nanoget","wip/nanostat","wip/py-htseq"],"requiredByCount":3,"runDepends":["biology/htslib","devel/zlib"],"status":null,"system":"netbsd","systemLabel":"NetBSD","version":"0.21.0","versions":null,"vulnerabilities":null,"www":"https://github.com/pysam-developers/pysam"}