{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":["editors/vim-share"],"categories":["wip","biology"],"comment":"Spliced Transcripts Alignment to a Reference","compare":null,"dependentCount":null,"description":"STAR (Spliced Transcripts Alignment to a Reference) aims to achieve\naccurate alignment of high-throughput RNA-seq data.  STAR is based on\na previously undescribed RNA-seq alignment algorithm that uses\nsequential maximum mappable seed search in uncompressed suffix arrays\nfollowed by seed clustering and stitching procedure. STAR outperforms\nother aligners by a factor of \u003e50 in mapping speed, aligning to the\nhuman genome 550 million 2 x 76 bp paired-end reads per hour on a modest\n12-core server, while at the same time improving alignment sensitivity\nand precision","flavors":[],"html":"https://daemonports.org/netbsd/wip/rna-star/","kind":"port","lastUpdate":null,"license":["gnu-gpl-v3"],"maintainer":"bacon@NetBSD.org","name":"rna-star","newest":false,"newestVersion":null,"noVulnData":false,"origin":"wip/rna-star","otherSystems":[],"packages":null,"pkgName":"rna-star-2.7.11b","related":["biology/rna-star"],"repository":"pkgsrc-wip","requiredBy":["wip/rna-seq"],"requiredByCount":1,"runDepends":["biology/htslib","devel/zlib","parallel/openmp"],"status":null,"system":"netbsd","systemLabel":"NetBSD","version":"2.7.11b","versions":null,"vulnerabilities":null,"www":"https://github.com/alexdobin/STAR"}