{"added":null,"apiVersion":1,"behindSince":null,"buildDepends":[],"categories":["wip","biology"],"comment":"Multiple Sequence Alignment Package","compare":null,"dependentCount":null,"description":"T-Coffee is a multiple sequence alignment package. Given a set of\nsequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment.\nMultiple sequence alignment programs are to align a set of sequences\npreviously gathered using other programs such as blast, fasta, etc.\nT-Coffee allows one to combine results obtained with several aligment\nmethods. If one alignment is from ClustalW and second is from Dialigni,\nT-Coffee will combine all that information and produce a new multiple\nsequence having the best alignment from these methods.\nBy default, T-Coffee will compare all your sequences two by two,\nproducing a global alignment and a series of local alignments (using lalign).\nThe program will then combine all these alignments into amultiple alignment.","flavors":[],"html":"https://daemonports.org/netbsd/wip/t-coffee/","kind":"port","lastUpdate":null,"license":[],"maintainer":"dprice@cs.nmsu.edu","name":"t-coffee","newest":false,"newestVersion":null,"noVulnData":false,"origin":"wip/t-coffee","otherSystems":[],"packages":null,"pkgName":"t-coffee-1.37","related":null,"repository":"pkgsrc-wip","requiredBy":[],"requiredByCount":0,"runDepends":["biology/clustalw"],"status":null,"system":"netbsd","systemLabel":"NetBSD","version":"1.37","versions":null,"vulnerabilities":null,"www":"http://igs-server.cnrs-mrs.fr/~cnotred/Packages/"}