biology/clustalw 2.1_3 FreeBSD

Multiple alignment program for DNA or proteins

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
Last update: 2026-10-08
Commit: 2414383046
License: LGPL3
Categories: biology
Package size: 257.2 KiB, 638.5 KiB installed

Description

ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences. It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.

In the other systems

System

Port

Version

FreeBSD

biology/clustalw

2.1_3

NetBSD

biology/clustalw

2.1

DragonFly

biology/clustalw

2.1_3

HardenedBSD

biology/clustalw

2.1_3

GhostBSD

biology/clustalw

2.1_3

Install

Binary package:

pkg install clustalw

From the ports tree:

cd /usr/ports/biology/clustalw/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	clustalw>0:biology/clustalw

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

2.1_3

2.1_2

2.1_3

FreeBSD:14:quarterly

2.1_3

n/a

2.1_3

FreeBSD:15:latest

2.1_3

n/a

2.1_3

FreeBSD:15:quarterly

2.1_3

n/a

FreeBSD:16:latest

2.1_3

n/a

FreeBSD:16:quarterly

n/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

Required by 3

Configuration

No options to configure.

Service scripts: none

Files

distinfo 1

File

Size

SHA256

clustalw-2.1.tar.gz

350761

e052059b87abfd8c9e695c280bfba86a65899138c82abccd5b00478a80f49486

Master sites 2

ftp://ftp.ebi.ac.uk/pub/software/clustalw2/2.1/
http://www.clustal.org/download/2.1/

Commit history 1

Date Commit Credits Log message

2026-10-08

2414383046

Jason W. Bacon

Release numerous ports to ports@

I've been retired for a few years, and it is unlikely I will be doing any more scientific computing support in the future. I have continued to maintain ~160 ports to the best of my ability, mainly as a favor to the community, but I can no longer justify the time and effort required. I am therefore releasing most of my scientific ports, along with a few others, to ports@. I will continue to maintain ports I am actively using and those for which I am upstream.