biology/mrbayes 3.2.7_2 FreeBSD
Bayesian inference of phylogeny
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- GPLv3
- Categories
- biology
- Package size
- 4918.0 KiB, 7104.6 KiB installed
Description
MrBayes is a program for the Bayesian estimation of phylogeny.
Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees.
In the other systems
The newest version among them is 3.2.7, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| FreeBSD | biology/mrbayes | 3.2.7_2 newest | none known | - | [email protected] | - |
| DragonFly | biology/mrbayes | 3.2.7_2 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/mrbayes | 3.2.7_2 newest | no data | - | [email protected] | - |
| GhostBSD | biology/mrbayes | 3.2.7_2 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install mrbayes
From the ports tree:
cd /usr/ports/biology/mrbayes/ && make install clean
To depend on this port in another port's Makefile:
RUN_DEPENDS= mrbayes>0:biology/mrbayes
Packages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 3.2.7_2 | 3.2.7_2 | 3.2.7_2 | 3.2.7_2 | 3.2.7_2 |
| FreeBSD:14:quarterly | 3.2.7_2 | 3.2.7_2 | n/a | 3.2.7_2 | 3.2.7_2 |
| FreeBSD:15:latest | 3.2.7_2 | 3.2.7_2 | n/a | 3.2.7_2 | 3.2.7_2 |
| FreeBSD:15:quarterly | 3.2.7_2 | 3.2.7_2 | n/a | n/a | n/a |
| FreeBSD:16:latest | 3.2.7_2 | 3.2.7_2 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Build dependencies 2
Run dependencies 2
No port depends on this one.
Configuration
Options name: biology_mrbayes
| Option | Default | Description |
|---|---|---|
| DOCS | off | Build and/or install documentation |
| EXAMPLES | off | Build and/or install examples |
| MPICH | off | Parallel processing support via MPICH |
| OPENMPI | off | Parallel processing support via Open MPI |
- USES
- readline
- Service scripts
- none
Message after installing
Files
pkg-plist 15
- bin/mb
- share/doc/mrbayes/COPYING
- share/doc/mrbayes/MBDating.pdf
- share/doc/mrbayes/Manual_MrBayes_v3.2.pdf
- share/doc/mrbayes/NEWS
- share/doc/mrbayes/README
- share/doc/mrbayes/hym.nex
- share/examples/mrbayes/avian_ovomucoids.nex
- share/examples/mrbayes/codon.nex
- share/examples/mrbayes/cynmix.nex
- share/examples/mrbayes/finch.nex
- share/examples/mrbayes/hymfossil.nex
- share/examples/mrbayes/primates.nex
- share/examples/mrbayes/replicase.nex
- share/examples/mrbayes/sceloporus.nex
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| NBISweden-MrBayes-v3.2.7_GH0.tar.gz | 9.825172e+06 | 64da39c01f606d0413ce90a1dd3c1ce2cbdef4cbad99aee8a4b2391a2e8db244 |
Commit history 0
No commits in the history this site was built from.