BSD Ports

biology/mrbayes 3.2.7_2 FreeBSD

Bayesian inference of phylogeny

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
License
GPLv3
Categories
biology
Package size
4918.0 KiB, 7104.6 KiB installed

Description

MrBayes is a program for the Bayesian estimation of phylogeny.

Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees.

In the other systems

The newest version among them is 3.2.7, as upstream numbers it.

SystemPortVersionVulnerabilitiesStatusMaintainerLast update
FreeBSDbiology/mrbayes3.2.7_2 newestnone known-[email protected]-
DragonFlybiology/mrbayes3.2.7_2 newestnone known-[email protected]-
HardenedBSDbiology/mrbayes3.2.7_2 newestno data-[email protected]-
GhostBSDbiology/mrbayes3.2.7_2 newestno data-[email protected]-

Install

Binary package:

pkg install mrbayes

From the ports tree:

cd /usr/ports/biology/mrbayes/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	mrbayes>0:biology/mrbayes

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest3.2.7_23.2.7_23.2.7_23.2.7_23.2.7_2
FreeBSD:14:quarterly3.2.7_23.2.7_2n/a3.2.7_23.2.7_2
FreeBSD:15:latest3.2.7_23.2.7_2n/a3.2.7_23.2.7_2
FreeBSD:15:quarterly3.2.7_23.2.7_2n/an/an/a
FreeBSD:16:latest3.2.7_23.2.7_2n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

Build dependencies 2
Run dependencies 2

No port depends on this one.

Configuration

Options name: biology_mrbayes

OptionDefaultDescription
DOCSoffBuild and/or install documentation
EXAMPLESoffBuild and/or install examples
MPICHoffParallel processing support via MPICH
OPENMPIoffParallel processing support via Open MPI
USES
readline
Service scripts
none

Message after installing

If MrBayes core dumps with "illegal hardware instruction (core dumped) mb", then
it should be built on the target system.

Files

pkg-plist 15
  • bin/mb
  • share/doc/mrbayes/COPYING
  • share/doc/mrbayes/MBDating.pdf
  • share/doc/mrbayes/Manual_MrBayes_v3.2.pdf
  • share/doc/mrbayes/NEWS
  • share/doc/mrbayes/README
  • share/doc/mrbayes/hym.nex
  • share/examples/mrbayes/avian_ovomucoids.nex
  • share/examples/mrbayes/codon.nex
  • share/examples/mrbayes/cynmix.nex
  • share/examples/mrbayes/finch.nex
  • share/examples/mrbayes/hymfossil.nex
  • share/examples/mrbayes/primates.nex
  • share/examples/mrbayes/replicase.nex
  • share/examples/mrbayes/sceloporus.nex
distinfo 1
FileSizeSHA256
NBISweden-MrBayes-v3.2.7_GH0.tar.gz9.825172e+0664da39c01f606d0413ce90a1dd3c1ce2cbdef4cbad99aee8a4b2391a2e8db244

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