BSD Portsbiology/beagle 5.2 NetBSD
Phasing genotypes and imputing ungenotyped markers
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- License
- gnu-gpl-v3
- Categories
- biology
- Package size
- 2053.7 KiB, 2070.0 KiB installed
Description
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.
The Beagle 5.2 genotype imputation method is described in:
B L Browning, Y Zhou, and S R Browning (2018). A one-penny imputed genome from next generation reference panels. Am J Hum Genet 103(3):338-348. doi:10.1016/j.ajhg.2018.07.015
The most recent reference for Beagle's phasing method is:
S R Browning and B L Browning (2007) Rapid and accurate haplotype phasing and missing data inference for whole genome association studies by use of localized haplotype clustering. Am J Hum Genet 81:1084-1097. doi:10.1086/521987
Install
Binary package:
pkgin install beagleFrom pkgsrc:
cd /usr/pkgsrc/biology/beagle && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 5.2 |
| NetBSD 10.1 aarch64 | 5.2 |
| SmartOS / illumos x86_64 | 5.2 |
| macOS 15 arm64 | 5.2 |
Dependencies
Run dependencies 1
No port depends on this one.