BSD Portsbiology/plink 1.07nb1 NetBSD
Whole-genome association analysis toolset
- System
- NetBSD
- Repository
- pkgsrc
- Maintainer
- [email protected]
- Last update
- Commit
e282cfb26b- License
- gnu-gpl-v2
- Categories
- biology
- Package size
- 953.6 KiB, 2974.8 KiB installed
Description
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data). Through integration with gPLINK and Haploview, there is some support for the subsequent visualization, annotation and storage of results.
In the other systems
| System | Port | Version |
|---|---|---|
| NetBSD | biology/plink | 1.07nb1 |
| FreeBSD | biology/plink | 1.90.b6.17_6 |
| DragonFly | biology/plink | 1.90.b6.17_5 |
| HardenedBSD | biology/plink | 1.90.b6.17_6 |
| GhostBSD | biology/plink | 1.90.b6.17_6 |
Install
Binary package:
pkgin install plinkFrom pkgsrc:
cd /usr/pkgsrc/biology/plink && make install cleanPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | Version |
|---|---|
| NetBSD 10.1 x86_64 | 1.07nb1 |
| NetBSD 10.1 aarch64 | - |
| SmartOS / illumos x86_64 | 1.07nb1 |
| macOS 15 arm64 | 1.07nb1 |
Dependencies
Run dependencies 3
No port depends on this one.