wip/nanoQC 0.9.4.20200617 NetBSD

Quality control tools for long read sequencing data aiming to replicate some of the plots made by fastQC. This is an immature tool and I welcome all contributions.

Creates dynamic plots using bokeh. For an example see http://decoster.xyz/wouter/.

nanoQC [-h] [-v] [-o OUTDIR] fastq

positional arguments: fastq Reads data in fastq.gz format.

optional arguments: -h, --help show this help message and exit -v, --version Print version and exit. -o, --outdir OUTDIR Specify directory in which output has to be created. -l, --minlen int Minimum length of reads to be included in the plots This also controls the length plotted in the graphs from the beginning and end of reads (length plotted = minlen / 2)

If you use this tool, please consider citing our publication: https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty149/4934939.