BSD Portsbiology/R-cran-BiocManager 1.30.27 FreeBSD
Convenient tool to install and update Bioconductor packages
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
ce2322be51- License
- ART20
- Categories
- biology
- Package size
- 630.3 KiB, 1211.0 KiB installed
Description
The BiocManager package, as the modern successor package to BiocInstaller, allows users to install and manage packages from the Bioconductor project. Bioconductor focuses on the statistical analysis and comprehension of high-throughput genomic data.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/R-cran-BiocManager | 1.30.27 |
| DragonFly | biology/R-cran-BiocManager | 1.30.25 |
| HardenedBSD | biology/R-cran-BiocManager | 1.30.27 |
| GhostBSD | biology/R-cran-BiocManager | 1.30.27 |
Install
Binary package:
pkg install R-cran-BiocManagerFrom the ports tree:
cd /usr/ports/biology/R-cran-BiocManager/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= R-cran-BiocManager>0:biology/R-cran-BiocManagerPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.30.27 | 1.30.27 | - | 1.30.26 | 1.30.27 |
| FreeBSD:14:quarterly | 1.30.27 | 1.30.27 | n/a | 1.30.25 | 1.30.27 |
| FreeBSD:15:latest | 1.30.27 | 1.30.27 | n/a | 1.30.26 | 1.30.26 |
| FreeBSD:15:quarterly | 1.30.27 | 1.30.27 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.30.27 | 1.30.27 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Test 6
R-cran-curl>0: ftp/R-cran-curlR-cran-knitr>0: print/R-cran-knitrR-cran-remotes>0: devel/R-cran-remotesR-cran-rmarkdown>0: textproc/R-cran-rmarkdownR-cran-testthat>0: devel/R-cran-testthatR-cran-withr>0: devel/R-cran-withr
The full lists below include those, and their dependencies in turn.
Build dependencies 86
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/lzo2
- archivers/zstd
- converters/fribidi
- converters/libiconv
- databases/gdbm
- devel/binutils
- devel/cmake-core
- devel/dbus
- devel/dbus-glib
- devel/gettext-runtime
- devel/glib20
- devel/gmake
- devel/icu
- devel/jsoncpp
- devel/libdaemon
- devel/libdatrie
- devel/libevent
- devel/libffi
- devel/libinotify
- devel/libthai
- devel/libunistring
- devel/libuv
- devel/pcre2
- devel/py-packaging
- devel/readline
- dns/libidn
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/cairo
- graphics/graphite2
- graphics/jbig2dec
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/openjpeg
- graphics/png
- graphics/poppler-data
- graphics/tiff
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/R
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- net/avahi-app
- ports-mgmt/pkg
- print/cups
- print/freetype2
- print/ghostscript10
- print/harfbuzz
- print/indexinfo
- print/libpaper
- security/libssh2
- security/rhash
- sysutils/gnome_subr
- textproc/expat2
- textproc/libxml2
- www/libnghttp2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-fonts/urw-base35-fonts
- x11-toolkits/libXmu
- x11-toolkits/libXt
- x11-toolkits/pango
- x11-toolkits/tk86
- x11/libICE
- x11/libSM
- x11/libX11
- x11/libXScrnSaver
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXrender
- x11/libxcb
- x11/pixman
- x11/xorgproto
Run dependencies 86
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/lzo2
- archivers/zstd
- converters/fribidi
- converters/libiconv
- databases/gdbm
- devel/binutils
- devel/cmake-core
- devel/dbus
- devel/dbus-glib
- devel/gettext-runtime
- devel/glib20
- devel/gmake
- devel/icu
- devel/jsoncpp
- devel/libdaemon
- devel/libdatrie
- devel/libevent
- devel/libffi
- devel/libinotify
- devel/libthai
- devel/libunistring
- devel/libuv
- devel/pcre2
- devel/py-packaging
- devel/readline
- dns/libidn
- dns/libidn2
- dns/libpsl
- ftp/curl
- graphics/cairo
- graphics/graphite2
- graphics/jbig2dec
- graphics/jbigkit
- graphics/jpeg-turbo
- graphics/lcms2
- graphics/lerc
- graphics/openjpeg
- graphics/png
- graphics/poppler-data
- graphics/tiff
- lang/gcc14
- lang/python312
- lang/python315
- lang/tcl86
- math/R
- math/gmp
- math/mpc
- math/mpdecimal
- math/mpfr
- net/avahi-app
- ports-mgmt/pkg
- print/cups
- print/freetype2
- print/ghostscript10
- print/harfbuzz
- print/indexinfo
- print/libpaper
- security/libssh2
- security/rhash
- sysutils/gnome_subr
- textproc/expat2
- textproc/libxml2
- www/libnghttp2
- x11-fonts/fontconfig
- x11-fonts/libXft
- x11-fonts/libfontenc
- x11-fonts/mkfontscale
- x11-fonts/urw-base35-fonts
- x11-toolkits/libXmu
- x11-toolkits/libXt
- x11-toolkits/pango
- x11-toolkits/tk86
- x11/libICE
- x11/libSM
- x11/libX11
- x11/libXScrnSaver
- x11/libXau
- x11/libXdmcp
- x11/libXext
- x11/libXrender
- x11/libxcb
- x11/pixman
- x11/xorgproto
Required by 1
Configuration
No options to configure.
- USES
- cran:auto-plist,compiles
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| BiocManager_1.30.27.tar.gz | 752490 | acbfdcf09602c8279085556ca54531c2ada0ac3c1775d54ce2c3b9a3dc03fbb5 |