BSD Ports

biology/TrimGalore 2.3.0_3 FreeBSD

Consistent quality and adapter trimming for next-generation sequencing data

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
Last update
Commit
9c878207a1
License
GPLv3
Categories
biology
Package size
2465.9 KiB, 6860.4 KiB installed

Description

Wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data.

In the other systems

SystemPortVersion
FreeBSDbiology/TrimGalore2.3.0_3
HardenedBSDbiology/TrimGalore2.3.0_2
GhostBSDbiology/TrimGalore2.3.0_2

Install

Binary package:

pkg install TrimGalore

From the ports tree:

cd /usr/ports/biology/TrimGalore/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	TrimGalore>0:biology/TrimGalore

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest2.3.0_22.3.0_3--2.3.0_3
FreeBSD:14:quarterly2.3.0_22.3.0_2n/a-2.3.0_2
FreeBSD:15:latest2.3.0_32.3.0_3n/a--
FreeBSD:15:quarterly2.3.0_22.3.0_2n/an/an/a
FreeBSD:16:latest2.3.0_22.3.0_3n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

Build dependencies 12

No port depends on this one.

Configuration

No options to configure.

USES
cargo
Service scripts
none

Files

pkg-plist 1
  • bin/trim_galore
distinfo 240
FileSizeSHA256
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Commit history 4

DateCommitCreditsLog message
9c878207a1 Mikael Urankar lang/rust: Bump revisions after 1.99.0
PR: 299016
7316461925 Mikael Urankar lang/rust: Bump revisions after 1.98.1
PR: 298139
9c892d2601 Mikael Urankar lang/rust: Bump revisions after 1.97.1
PR: 296645
ab64d74cd8 Rodrigo Osorio biology/TrimGalore: update 2.2.0 -> 2.3.0
Changelog: https://github.com/FelixKrueger/TrimGalore/releases/tag/v2.3.0