biology/andi 1.15 FreeBSD
Efficient estimation of evolutionary distances
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- GPLv3
- Categories
- biology, devel
- Package size
- 476.0 KiB, 524.6 KiB installed
Description
andi is a program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compute full alignments, it is so efficient that it scales even up to thousands of bacterial genomes.
Install
Binary package:
pkg install andiFrom the ports tree:
cd /usr/ports/biology/andi/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= andi>0:biology/andiPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.15 | 1.15 | - | 0.14.3 | 1.15 |
| FreeBSD:14:quarterly | 1.15 | 1.15 | n/a | 0.14.3 | 1.15 |
| FreeBSD:15:latest | 1.15 | 1.15 | n/a | 0.14.3 | 0.14.3 |
| FreeBSD:15:quarterly | 1.15 | 1.15 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.15 | 1.15 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Library 2
libdivsufsort.so: math/libdivsufsortlibgsl.so: math/gsl
The full lists below include those, and their dependencies in turn.
Build dependencies 11
Run dependencies 3
No port depends on this one.
Configuration
Options name: biology_andi
| Option | Default | Description |
|---|---|---|
| DOCS | off | Build and/or install documentation |
- USES
- autoreconf gmake localbase pkgconfig
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| EvolBioInf-andi-v1.15_GH0.tar.gz | 551244 | 2e26ab53c06740b2d71d7905b185f49b53108a918f1640e3610a7f48b485a047 |
Commit history 0
No commits in the history this site was built from.