BSD Ports

biology/bfc g20150417 FreeBSD

Correct sequencing errors from Illumina sequencing data

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
Last update
Commit
2414383046
License
MIT
Categories
biology
Package size
28.0 KiB, 53.9 KiB installed

Description

BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data. It is specifically designed for high-coverage whole-genome human data, though also performs well for small genomes.

In the other systems

SystemPortVersion
FreeBSDbiology/bfcg20150417
DragonFlybiology/bfcg20150417

Install

Binary package:

pkg install bfc

From the ports tree:

cd /usr/ports/biology/bfc/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	bfc>0:biology/bfc

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latestg20150417g20150417g20150417g20150417g20150417
FreeBSD:14:quarterlyg20150417g20150417n/ag20150417g20150417
FreeBSD:15:latestg20150417g20150417n/ag20150417g20150417
FreeBSD:15:quarterlyg20150417g20150417n/an/an/a
FreeBSD:16:latestg20150417g20150417n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

Build dependencies 3
Required by 1

Configuration

No options to configure.

USES
gmake
Service scripts
none

Files

distinfo 1
FileSizeSHA256
lh3-bfc-g20150417-69ab176e_GH0.tar.gz68138202913e590421d23571c5e7c5cb9c23730ee57cb5b2eaa0e7806d33c49482452

Commit history 1

DateCommitCreditsLog message
2414383046 Jason W. Bacon Release numerous ports to ports@
I've been retired for a few years, and it is unlikely I will be doing any more scientific computing support in the future. I have continued to maintain ~160 ports to the best of my ability, mainly as a favor to the community, but I can no longer justify the time and effort required. I am therefore releasing most of my scientific ports, along with a few others, to ports@. I will continue to maintain ports I am actively using and those for which I am upstream.