BSD Portsbiology/btllib 1.8.0 FreeBSD
Bioinformatics Technology Lab common code library
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
5faaf2fa6d- License
- GPLv3
- Categories
- biology, devel
- Package size
- 720.0 KiB, 2771.5 KiB installed
Description
Bioinformatics Technology Lab's common code library in C++.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/btllib | 1.8.0 |
| HardenedBSD | biology/btllib | 1.7.8 |
| GhostBSD | biology/btllib | 1.7.6 |
Install
Binary package:
pkg install btllibFrom the ports tree:
cd /usr/ports/biology/btllib/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= btllib>0:biology/btllib
LIB_DEPENDS= libbtllib.so:biology/btllibPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.7.8 | 1.8.0 | - | - | - |
| FreeBSD:14:quarterly | 1.7.8 | 1.7.8 | n/a | - | - |
| FreeBSD:15:latest | 1.8.0 | 1.8.0 | n/a | - | - |
| FreeBSD:15:quarterly | 1.7.8 | 1.7.8 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.7.8 | 1.8.0 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 3
bash: shells/bashsamtools: biology/samtoolscmake: devel/cmake-core
Library 1
libsdsl.so: devel/sdsl-lite
Runtime 1
samtools: biology/samtools
The full lists below include those, and their dependencies in turn.
Build dependencies 29
- archivers/brotli
- archivers/libdeflate
- archivers/liblz4
- archivers/zstd
- biology/htslib
- biology/samtools
- devel/cmake-core
- devel/gettext-runtime
- devel/jsoncpp
- devel/libffi
- devel/libunistring
- devel/libuv
- devel/meson
- devel/ninja
- devel/pkgconf
- devel/readline
- devel/sdsl-lite
- dns/libidn2
- dns/libpsl
- ftp/curl
- lang/python312
- math/mpdecimal
- ports-mgmt/pkg
- print/indexinfo
- security/libssh2
- security/rhash
- shells/bash
- textproc/expat2
- www/libnghttp2
Run dependencies 14
Required by 1
Configuration
No options to configure.
- USES
- meson pkgconfig python:build shebangfix
- Service scripts
- none
Files
pkg-plist 41
- bin/indexlr
- bin/mi_bf_generate
- bin/randseq
- include/btllib/aahash.hpp
- include/btllib/bihash.hpp
- include/btllib/bihash_hashing_internals.hpp
- include/btllib/bihash_kmer.hpp
- include/btllib/bihash_kmer_base.hpp
- include/btllib/bihash_kmer_bi.hpp
- include/btllib/bihash_kmer_directional.hpp
- include/btllib/bloom_filter.hpp
- include/btllib/counting_bloom_filter-inl.hpp
- include/btllib/counting_bloom_filter.hpp
- include/btllib/cpptoml.h
- include/btllib/cstring.hpp
- include/btllib/data_stream.hpp
- include/btllib/graph.hpp
- include/btllib/hashing_internals.hpp
- include/btllib/indexlr.hpp
- include/btllib/mi_bloom_filter-inl.hpp
- include/btllib/mi_bloom_filter.hpp
- include/btllib/nthash.hpp
- include/btllib/nthash_kmer.hpp
- include/btllib/nthash_seed.hpp
- include/btllib/order_queue.hpp
- include/btllib/process_pipeline.hpp
- include/btllib/randseq.hpp
- include/btllib/seq.hpp
- include/btllib/seq_reader.hpp
- include/btllib/seq_reader_fasta_module.hpp
- include/btllib/seq_reader_fastq_module.hpp
- include/btllib/seq_reader_multiline_fasta_module.hpp
- include/btllib/seq_reader_multiline_fastq_module.hpp
- include/btllib/seq_reader_sam_module.hpp
- include/btllib/seq_writer.hpp
- include/btllib/status.hpp
- include/btllib/util.hpp
- lib/libbtllib.so
- %%PYTHON_SITELIBDIR%%/btllib/__init__.py
- %%PYTHON_SITELIBDIR%%/btllib/_btllib.so
- %%PYTHON_SITELIBDIR%%/setup.py
distinfo 3
| File | Size | SHA256 |
|---|---|---|
| bcgsc-btllib-v1.8.0_GH0.tar.gz | 1.123755e+06 | 81c29b0b486f8ba1014b145c58cf0a9aec1356297bbdb5fa76cee9ab7a06a983 |
| p-ranav-argparse-15d745f_GH0.tar.gz | 105608 | f033d4eb4a430b4ae4bf3c2a40e087709bf77462c1f9968ae07828437219a370 |
| skystrife-cpptoml-fededad_GH0.tar.gz | 47398 | dd2d129b67f537ae7d6f8d8d084c8c0d772d0f5b4b3118c1892e67ff536e335e |