BSD Portsbiology/cd-hit 4.8.1_3 FreeBSD
Clustering and comparing protein or nucleotide sequences
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- GPLv2
- Categories
- biology
- Package size
- 119.6 KiB, 870.3 KiB installed
Description
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/cd-hit | 4.8.1_3 |
| DragonFly | biology/cd-hit | 4.8.1_3 |
| HardenedBSD | biology/cd-hit | 4.8.1_3 |
| GhostBSD | biology/cd-hit | 4.8.1_3 |
Install
Binary package:
pkg install cd-hitFrom the ports tree:
cd /usr/ports/biology/cd-hit/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= cd-hit>0:biology/cd-hitPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 4.8.1_3 | 4.8.1_3 | - | 4.8.1_3 | 4.8.1_3 |
| FreeBSD:14:quarterly | 4.8.1_3 | 4.8.1_3 | n/a | 4.8.1_3 | 4.8.1_3 |
| FreeBSD:15:latest | 4.8.1_3 | 4.8.1_3 | n/a | 4.8.1_3 | 4.8.1_3 |
| FreeBSD:15:quarterly | 4.8.1_3 | 4.8.1_3 | n/a | n/a | n/a |
| FreeBSD:16:latest | 4.8.1_3 | 4.8.1_3 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Build dependencies 3
Required by 2
Configuration
No options to configure.
- USES
- gmake shebangfix
- Service scripts
- none
Files
pkg-plist 37
- bin/FET.pl
- bin/cd-hit
- bin/cd-hit-2d
- bin/cd-hit-2d-para.pl
- bin/cd-hit-454
- bin/cd-hit-clstr_2_blm8.pl
- bin/cd-hit-div
- bin/cd-hit-div.pl
- bin/cd-hit-est
- bin/cd-hit-est-2d
- bin/cd-hit-para.pl
- bin/clstr2tree.pl
- bin/clstr2txt.pl
- bin/clstr2xml.pl
- bin/clstr_cut.pl
- bin/clstr_list.pl
- bin/clstr_list_sort.pl
- bin/clstr_merge.pl
- bin/clstr_merge_noorder.pl
- bin/clstr_quality_eval.pl
- bin/clstr_quality_eval_by_link.pl
- bin/clstr_reduce.pl
- bin/clstr_renumber.pl
- bin/clstr_rep.pl
- bin/clstr_reps_faa_rev.pl
- bin/clstr_rev.pl
- bin/clstr_select.pl
- bin/clstr_select_rep.pl
- bin/clstr_size_histogram.pl
- bin/clstr_size_stat.pl
- bin/clstr_sort_by.pl
- bin/clstr_sort_prot_by.pl
- bin/clstr_sql_tbl.pl
- bin/clstr_sql_tbl_sort.pl
- bin/make_multi_seq.pl
- bin/plot_2d.pl
- bin/plot_len1.pl
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| weizhongli-cdhit-V4.8.1_GH0.tar.gz | 945639 | f8bc3cdd7aebb432fcd35eed0093e7a6413f1e36bbd2a837ebc06e57cdb20b70 |