BSD Portsbiology/cdbfasta 2023.07.10 FreeBSD
Fast indexing and retrieval of FASTA records from flat file databases
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- ART20
- Categories
- biology
- Package size
- 56.2 KiB, 197.0 KiB installed
Description
Cdbfasta creates an index file for a multi-FASTA file to facilitate fast retrieval of any sequence using cdbyank.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/cdbfasta | 2023.07.10 |
| DragonFly | biology/cdbfasta | 2023.07.10 |
| HardenedBSD | biology/cdbfasta | 2023.07.10 |
| GhostBSD | biology/cdbfasta | 2023.07.10 |
Install
Binary package:
pkg install cdbfastaFrom the ports tree:
cd /usr/ports/biology/cdbfasta/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= cdbfasta>0:biology/cdbfastaPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 2023.07.10 | 2023.07.10 | 2010.07.22 | 2023.07.10 | 2023.07.10 |
| FreeBSD:14:quarterly | 2023.07.10 | 2023.07.10 | n/a | 2023.07.10 | 2023.07.10 |
| FreeBSD:15:latest | 2023.07.10 | 2023.07.10 | n/a | 2023.07.10 | 2023.07.10 |
| FreeBSD:15:quarterly | 2023.07.10 | 2023.07.10 | n/a | n/a | n/a |
| FreeBSD:16:latest | 2023.07.10 | 2023.07.10 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
Build dependencies 3
No port depends on this one.
Configuration
No options to configure.
- USES
- gmake
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| gpertea-cdbfasta-2023.07.10-da8f5ba_GH0.tar.gz | 63949 | c32c1b09998ae24333dbf432740ef7d087d4c8987e8131363233242542d048ac |