BSD Portsbiology/clustal-omega 1.2.4 FreeBSD
Multiple alignment of nucleic acid and protein, replaces clustalw
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
118653d1bc- License
- GPLv2
- Categories
- biology
- Package size
- 413.7 KiB, 1918.8 KiB installed
Description
Clustal Omega is the latest addition to the Clustal family. It offers a significant increase in scalability over previous versions, allowing hundreds of thousands of sequences to be aligned in only a few hours. It will also make use of multiple processors, where present. In addition, the quality of alignments is superior to previous versions, as measured by a range of popular benchmarks.
In the other systems
The newest version among them is 1.2.4, as upstream numbers it.
| System | Port | Version | Vulnerabilities | Status | Maintainer | Last update |
|---|---|---|---|---|---|---|
| FreeBSD | biology/clustal-omega | 1.2.4 newest | none known | - | [email protected] | 2026-10-08 |
| DragonFly | biology/clustal-omega | 1.2.4 newest | none known | - | [email protected] | - |
| HardenedBSD | biology/clustal-omega | 1.2.4 newest | no data | - | [email protected] | - |
| GhostBSD | biology/clustal-omega | 1.2.4 newest | no data | - | [email protected] | - |
Install
Binary package:
pkg install clustal-omegaFrom the ports tree:
cd /usr/ports/biology/clustal-omega/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= clustal-omega>0:biology/clustal-omegaPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.2.4 | 1.2.4 | 1.2.4 | 1.2.4 | 1.2.4 |
| FreeBSD:14:quarterly | 1.2.4 | 1.2.4 | n/a | 1.2.4 | 1.2.4 |
| FreeBSD:15:latest | 1.2.4 | 1.2.4 | n/a | 1.2.4 | 1.2.4 |
| FreeBSD:15:quarterly | 1.2.4 | 1.2.4 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.2.4 | 1.2.4 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependency graph
Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.
Dependencies
As this port's Makefile names them.
Library 1
libargtable2.so: devel/argtable
The full lists below include those, and their dependencies in turn.
Build dependencies 1
Run dependencies 1
Required by 1
Configuration
No options to configure.
- USES
- libtool localbase
- Service scripts
- none
Files
pkg-plist 32
- bin/clustalo
- include/clustalo/clustal-omega-config.h
- include/clustalo/clustal-omega.h
- include/clustalo/clustal/hhalign_wrapper.h
- include/clustalo/clustal/ktuple_pair.h
- include/clustalo/clustal/log.h
- include/clustalo/clustal/mbed.h
- include/clustalo/clustal/muscle_tree.h
- include/clustalo/clustal/pair_dist.h
- include/clustalo/clustal/progress.h
- include/clustalo/clustal/seq.h
- include/clustalo/clustal/symmatrix.h
- include/clustalo/clustal/tree.h
- include/clustalo/clustal/util.h
- include/clustalo/clustal/weights.h
- include/clustalo/hhalign/general.h
- include/clustalo/hhalign/hhfunc.h
- include/clustalo/squid/gki.h
- include/clustalo/squid/gsi64.h
- include/clustalo/squid/msa.h
- include/clustalo/squid/rk.h
- include/clustalo/squid/sqfuncs.h
- include/clustalo/squid/squid.h
- include/clustalo/squid/sre_random.h
- include/clustalo/squid/ssi.h
- include/clustalo/squid/stockholm.h
- include/clustalo/squid/stopwatch.h
- include/clustalo/squid/vectorops.h
- include/clustalo/squid/version.h
- lib/libclustalo.a
- libdata/pkgconfig/clustalo.pc
- share/doc/clustal-omega/README
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| clustal-omega-1.2.4.tar.gz | 1.170516e+06 | 8683d2286d663a46412c12a0c789e755e7fd77088fb3bc0342bb71667f05a3ee |
Master sites 1
- http://www.clustal.org/omega/