biology/cytoscape 3.6.1_2 FreeBSD

Software to visualize molecular interaction networks, gene expression

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
License: LGPL21
Categories: biology, java
Package size: 1209899.6 KiB, 1285621.3 KiB installed

Description

Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.

In the other systems

The newest version among them is 3.6.1, as upstream numbers it.

System

Port

Version

Vulnerabilities

Status

Maintainer

Last update

FreeBSD

biology/cytoscape

3.6.1_2 newest

none known

[email protected]

HardenedBSD

biology/cytoscape

3.6.1_2 newest

no data

[email protected]

GhostBSD

biology/cytoscape

3.6.1_2 newest

no data

[email protected]

Install

Binary package:

pkg install cytoscape

From the ports tree:

cd /usr/ports/biology/cytoscape/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	cytoscape>0:biology/cytoscape

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

3.6.1_2

FreeBSD:14:quarterly

3.6.1_2

n/a

FreeBSD:15:latest

3.6.1_2

n/a

FreeBSD:15:quarterly

3.6.1_2

n/a

FreeBSD:16:latest

3.6.1_2

n/a

FreeBSD:16:quarterly

n/a

Dependency graph

Ports that need it on the left, what it needs to run on the right; at most 8 of each. "Dependencies" below lists them all.

graph LR
  me["biology/cytoscape"]
  me --> d0["archivers/brotli"]
  me --> d1["audio/alsa-lib"]
  me --> d2["devel/gettext-runtime"]
  me --> d3["devel/libinotify"]
  me --> d4["graphics/giflib"]
  me --> d5["graphics/png"]
  me --> d6["java/java-zoneinfo"]
  me --> d7["java/javavmwrapper"]
  me -.-> dmore(["22 more"])
  classDef this fill:#ab2b28,color:#ffffff,stroke:#ab2b28
  class me this

Dependencies

As this port's Makefile names them.

Build 2

maven363>0 : devel/maven363
bash : shells/bash

Runtime 1

bash : shells/bash

The full lists below include those, and their dependencies in turn.

Build dependencies 58

Run dependencies 30

No port depends on this one.

Configuration

No options to configure.

USES: java shebangfix
Service scripts: none

Files

distinfo 9

File

Size

SHA256

FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz

1.235655281e+09

f3e33e99168b56768d2ee854956e59bcbb888101fd518239887524d692b78f7a

install4j-maven-plugin-1.1.1.jar

27105

301f5ca0718e630a62583561fb1a05c26ee40b5dc81ddd1ffc56bb17c813c506

cytoscape-cytoscape-3.6.1_GH0.tar.gz

12785

f172c9e459293661a83d2618da511901410336b76b0c1716697e60f821c2f150

cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz

2863

0786e8d7877fa54d2a64d65209856a4a946df4facd3cbc947e8c65d14a035084

cytoscape-cytoscape-api-3.6.1_GH0.tar.gz

1.731631e+06

a264a434d5942cad2ef69df7aa29fad74a6d1f11369a964d7c38462608def73b

cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz

2.985104e+07

0fcea5a4d804972db5b0cf77174a953d22da8fed6740dbaa01754eb7aea50d21

cytoscape-cytoscape-support-3.6.1_GH0.tar.gz

52940

3f13088c35d41fa616dc7e735469f360ee4d17b1838cde8291f88b01bacfe657

cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz

1.4818052e+07

73fb7efb51a0413252a7e9e28d4fb7e28d16eea9f60be534fd962a5e534ca72e

cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz

1887

9cf7b64a3e6effd22a20d577c7fa41b11f896e2298ef1655f2fe31c21602bce0

Master sites 2

LOCAL/yuri/:maven
http://people.freebsd.org/~yuri/:maven

Commit history 0

No commits in the history this site was built from.