biology/fastani 1.34_1 FreeBSD

Fast Whole-Genome Similarity (ANI) Estimation

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
License: APACHE20
Categories: biology
Package size: 106.6 KiB, 283.5 KiB installed

Description

FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies.

In the other systems

System

Port

Version

FreeBSD

biology/fastani

1.34_1

HardenedBSD

biology/fastani

1.34_1

GhostBSD

biology/fastani

1.34_1

Install

Binary package:

pkg install fastani

From the ports tree:

cd /usr/ports/biology/fastani/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	fastani>0:biology/fastani

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

1.34_1

FreeBSD:14:quarterly

1.34_1

n/a

1.34_1

FreeBSD:15:latest

1.34_1

n/a

1.34

FreeBSD:15:quarterly

1.34_1

n/a

FreeBSD:16:latest

1.34_1

n/a

FreeBSD:16:quarterly

n/a

Dependencies

As this port's Makefile names them.

Library 1

libgsl.so : math/gsl

The full lists below include those, and their dependencies in turn.

Build dependencies 16

Run dependencies 2

No port depends on this one.

Configuration

No options to configure.

USES: cmake:testing
Service scripts: none

Files

distinfo 2

File

Size

SHA256

ParBLiSS-FastANI-v1.34_GH0.tar.gz

3.899028e+06

dc185cf29b9fa40cdcc2c83bb48150db46835e49b9b64a3dbff8bc4d0f631cb1

catchorg-Catch2-359542d_GH0.tar.gz

1.031988e+06

607bf5322291859a136b2580151f41897335e91c51fe0c4dd3950093ff96244b

Commit history 0

No commits in the history this site was built from.