BSD Portsbiology/fastp 1.4.0 FreeBSD
Ultra-fast all-in-one FASTQ preprocessor
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
ccb32a8ebf- License
- MIT
- Categories
- biology
- Package size
- 181.0 KiB, 529.5 KiB installed
Description
fastp is a tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/fastp | 1.4.0 |
| NetBSD | biology/fastp | 0.22.0 |
| DragonFly | biology/fastp | 0.23.4 |
| HardenedBSD | biology/fastp | 1.2.0 |
| GhostBSD | biology/fastp | 1.2.0 |
Install
Binary package:
pkg install fastpFrom the ports tree:
cd /usr/ports/biology/fastp/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= fastp>0:biology/fastpPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.2.0 | 1.4.0 | - | - | - |
| FreeBSD:14:quarterly | 1.2.0 | 1.2.0 | n/a | - | - |
| FreeBSD:15:latest | 1.4.0 | 1.4.0 | n/a | - | - |
| FreeBSD:15:quarterly | 1.2.0 | 1.2.0 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.2.0 | 1.4.0 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Library 3
libdeflate.so: archivers/libdeflatelibhwy.so: devel/highwaylibisal.so: devel/isa-l
The full lists below include those, and their dependencies in turn.
Build dependencies 7
Run dependencies 3
No port depends on this one.
Configuration
No options to configure.
- USES
- gmake localbase:ldflags pkgconfig
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| OpenGene-fastp-v1.4.0_GH0.tar.gz | 117999 | 28c0537e9d1f32f5a5c404562e6a282bf373b034a4c3a3610d9aa31d6429b550 |