BSD Portsbiology/fasttree 2.1.11 FreeBSD
Approximately-maximum-likelihood phylogenetic trees from alignments
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- GPLv2+
- Categories
- biology
- Package size
- 109.8 KiB, 212.2 KiB installed
Description
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/fasttree | 2.1.11 |
| NetBSD | biology/fasttree | 2.1.11 |
| DragonFly | biology/fasttree | 2.1.11 |
Install
Binary package:
pkg install FastTreeFrom the ports tree:
cd /usr/ports/biology/fasttree/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= FastTree>0:biology/fasttreePackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 2.1.11 | 2.1.11 | - | 2.1.11 | 2.1.11 |
| FreeBSD:14:quarterly | 2.1.11 | 2.1.11 | n/a | 2.1.11 | 2.1.11 |
| FreeBSD:15:latest | 2.1.11 | 2.1.11 | n/a | 2.1.11 | 2.1.11 |
| FreeBSD:15:quarterly | 2.1.11 | 2.1.11 | n/a | n/a | n/a |
| FreeBSD:16:latest | 2.1.11 | 2.1.11 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
No port depends on this one.
Configuration
No options to configure.
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| FastTree-2.1.11.c | 395543 | 9026ae550307374be92913d3098f8d44187d30bea07902b9dcbfb123eaa2050f |
Master sites 1
- https://www.microbesonline.org/fasttree/