BSD Portsbiology/fastx-toolkit 0.0.14_1 FreeBSD
CLI tools for Short-Reads FASTA/FASTQ files preprocessing
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- AGPLv3+
- Categories
- biology
- Package size
- 78.3 KiB, 359.8 KiB installed
Description
The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/fastx-toolkit | 0.0.14_1 |
| NetBSD | biology/fastx-toolkit | 0.0.14.6nb1 |
| DragonFly | biology/fastx-toolkit | 0.0.14_1 |
| HardenedBSD | biology/fastx-toolkit | 0.0.14_1 |
| GhostBSD | biology/fastx-toolkit | 0.0.14_1 |
Install
Binary package:
pkg install fastx_toolkitFrom the ports tree:
cd /usr/ports/biology/fastx-toolkit/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= fastx_toolkit>0:biology/fastx-toolkitPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 0.0.14_1 | 0.0.14_1 | 0.0.14 | 0.0.14_1 | 0.0.14_1 |
| FreeBSD:14:quarterly | 0.0.14_1 | 0.0.14_1 | n/a | 0.0.14_1 | 0.0.14_1 |
| FreeBSD:15:latest | 0.0.14_1 | 0.0.14_1 | n/a | 0.0.14_1 | 0.0.14_1 |
| FreeBSD:15:quarterly | 0.0.14_1 | 0.0.14_1 | n/a | n/a | n/a |
| FreeBSD:16:latest | 0.0.14_1 | 0.0.14_1 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Library 1
libgtextutils.so: biology/libgtextutils
The full lists below include those, and their dependencies in turn.
Build dependencies 10
Run dependencies 2
No port depends on this one.
Configuration
No options to configure.
- USES
- autoreconf libtool perl5 pkgconfig shebangfix
- Service scripts
- none
- Conflicts with
- autoconf-archive
Files
pkg-plist 23
- bin/fasta_clipping_histogram.pl
- bin/fasta_formatter
- bin/fasta_nucleotide_changer
- bin/fastq_masker
- bin/fastq_quality_boxplot_graph.sh
- bin/fastq_quality_converter
- bin/fastq_quality_filter
- bin/fastq_quality_trimmer
- bin/fastq_to_fasta
- bin/fastx_artifacts_filter
- bin/fastx_barcode_splitter.pl
- bin/fastx_clipper
- bin/fastx_collapser
- bin/fastx_nucleotide_distribution_graph.sh
- bin/fastx_nucleotide_distribution_line_graph.sh
- bin/fastx_quality_stats
- bin/fastx_renamer
- bin/fastx_reverse_complement
- bin/fastx_trimmer
- bin/fastx_uncollapser
- share/aclocal/ax_c_long_long.m4
- share/aclocal/ax_cxx_compile_stdcxx_11.m4
- share/aclocal/ax_cxx_header_stdcxx_tr1.m4
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| agordon-fastx_toolkit-0.0.14_GH0.tar.gz | 259576 | af4f9fe59f8c91bdd2d735bdac1fd89f0549b2bc759313fe3b86948056aad1aa |