biology/fluctuate 1.40 FreeBSD

Program to fit population models

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
Categories: biology
Package size: 61.5 KiB, 138.5 KiB installed

Description

Fluctuate fits the model which has a single population which has been growing (or shrinking) according to an exponential growth law. It estimates 4Nu and g, where N is the effective population size, u is the neutral mutation rate per site, and g is the growth rate of the population.

Fluctuate forms part of the Lamarc (Likelihood Analysis with Metropolis Algorithm using Random Coalescence) suite. See:

http://evolution.genetics.washington.edu/lamarc.html

In the other systems

System

Port

Version

FreeBSD

biology/fluctuate

1.40

NetBSD

biology/fluctuate

1.4

DragonFly

biology/fluctuate

1.40

HardenedBSD

biology/fluctuate

1.40

GhostBSD

biology/fluctuate

1.40

Install

Binary package:

pkg install fluctuate

From the ports tree:

cd /usr/ports/biology/fluctuate/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	fluctuate>0:biology/fluctuate

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository	aarch64	amd64	armv6	armv7	i386
FreeBSD:14:latest	1.40	1.40	1.40	1.40	1.40
FreeBSD:14:quarterly	1.40	1.40	n/a	1.40	1.40
FreeBSD:15:latest	1.40	1.40	n/a	1.40	1.40
FreeBSD:15:quarterly	1.40	1.40	n/a	n/a	n/a
FreeBSD:16:latest	1.40	1.40	n/a	n/a	n/a
FreeBSD:16:quarterly	n/a	n/a	n/a	n/a	n/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

No port depends on this one.

Configuration

Options name: biology_fluctuate

Option

Default

Description

DOCS

off

Build and/or install documentation

Service scripts: none

Message after installing

===>   NOTICE:

The fluctuate port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

Files

distinfo 1

File

Size

SHA256

fluctuate1.4.src.doc.tar.gz

70690

920ce06de2a02e18c149a803f9c5f32657948b88c0c97c5297371949f0cde109

Master sites 1

http://evolution.gs.washington.edu/lamarc/fluctuate/

Commit history 0

No commits in the history this site was built from.