biology/garlic 1.6_1 FreeBSD

Molecular viewer, editor, and visualization program

System: FreeBSD
Repository: FreeBSD ports
Maintainer: [email protected]
Categories: biology
Package size: 1309.4 KiB, 2238.0 KiB installed

Description

Free, open source molecular viewer and editor for protein structure, DNA structure, PDB, molecular rendering, biological macromolecule. Atoms may be drawn as spheres of different sizes. Bonds may be drawn as cylindrical sticks, conical sticks or as curved surfaces. Five types of slab are available: planar, spherical, semi-spherical, cylindrical and semi-cylindrical. The slab position and thickness are visible in a small window. Atomic bonds as well as atoms are treated as independent drawable objects. and more.

In the other systems

System

Port

Version

FreeBSD

biology/garlic

1.6_1

DragonFly

biology/garlic

1.6_1

HardenedBSD

biology/garlic

1.6_1

GhostBSD

biology/garlic

1.6_1

Install

Binary package:

pkg install garlic

From the ports tree:

cd /usr/ports/biology/garlic/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	garlic>0:biology/garlic

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

1.6_1

FreeBSD:14:quarterly

1.6_1

n/a

1.6_1

FreeBSD:15:latest

1.6_1

n/a

1.6_1

FreeBSD:15:quarterly

1.6_1

n/a

FreeBSD:16:latest

1.6_1

n/a

FreeBSD:16:quarterly

n/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

Build dependencies 8

Run dependencies 5

No port depends on this one.

Configuration

Options name: biology_garlic

Option

Default

Description

DOCS

off

Build and/or install documentation

EXAMPLES

off

Build and/or install examples

OPTIMIZED_CFLAGS

off

Use extra compiler optimizations

USES: gmake xorg
Service scripts: none

Message after installing

===>   NOTICE:

The garlic port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

Files

pkg-plist 302

bin/garlic
share/garlic/.garlicrc
share/garlic/residues.pdb
share/doc/garlic/README
share/doc/garlic/ascorbic_acid1.jpg
share/doc/garlic/ascorbic_acid2.jpg
share/doc/garlic/bold_statement.html
share/doc/garlic/bugfixes/favicon.ico
share/doc/garlic/bugfixes/garlic.gif
share/doc/garlic/bugfixes/index.html
share/doc/garlic/changes/favicon.ico
share/doc/garlic/changes/garlic.gif
share/doc/garlic/changes/index.html
share/doc/garlic/commands/aacodes.gif
share/doc/garlic/commands/add.html
share/doc/garlic/commands/ang.html
share/doc/garlic/commands/ato.html
share/doc/garlic/commands/atoms.gif
share/doc/garlic/commands/bac.html
share/doc/garlic/commands/bal.html
share/doc/garlic/commands/balls_and_sticks.gif
share/doc/garlic/commands/bg.html
share/doc/garlic/commands/blu.html
share/doc/garlic/commands/blur1.gif
share/doc/garlic/commands/blur2.gif
share/doc/garlic/commands/blur3.gif
share/doc/garlic/commands/blur4.gif
share/doc/garlic/commands/blur5.gif
share/doc/garlic/commands/blur6.gif
share/doc/garlic/commands/blur7.gif
share/doc/garlic/commands/blur8.gif
share/doc/garlic/commands/bon.html
share/doc/garlic/commands/bonds.gif
share/doc/garlic/commands/cat.html
share/doc/garlic/commands/cen.html
share/doc/garlic/commands/chi_angles.gif
share/doc/garlic/commands/col.html
share/doc/garlic/commands/colors.png
share/doc/garlic/commands/com.html
share/doc/garlic/commands/cre.html
share/doc/garlic/commands/dihedrals.html
share/doc/garlic/commands/dis.html
share/doc/garlic/commands/doc.html
share/doc/garlic/commands/dock1.jpg
share/doc/garlic/commands/dock2.jpg
share/doc/garlic/commands/dum.html
share/doc/garlic/commands/dummy_atoms.html
share/doc/garlic/commands/edi.html
share/doc/garlic/commands/eis_oct.gif
share/doc/garlic/commands/exe.html
share/doc/garlic/commands/exi.html
share/doc/garlic/commands/fad.html
share/doc/garlic/commands/favicon.ico
share/doc/garlic/commands/fg.html
share/doc/garlic/commands/fon.html
share/doc/garlic/commands/garlic.gif
share/doc/garlic/commands/generic_hint.gif
share/doc/garlic/commands/gly_hint.gif
share/doc/garlic/commands/gro.html
share/doc/garlic/commands/hid.html
share/doc/garlic/commands/hyb.html
share/doc/garlic/commands/id.gif
share/doc/garlic/commands/ign.html
share/doc/garlic/commands/index.html
share/doc/garlic/commands/insert
share/doc/garlic/commands/kd_eis.gif
share/doc/garlic/commands/kd_oct.gif
share/doc/garlic/commands/lab.html
share/doc/garlic/commands/large_probe.gif
share/doc/garlic/commands/legend.gif
share/doc/garlic/commands/loa.html
share/doc/garlic/commands/log.html
share/doc/garlic/commands/mem.html
share/doc/garlic/commands/mon.html
share/doc/garlic/commands/mov.html
share/doc/garlic/commands/nei.html
share/doc/garlic/commands/neighbor.gif
share/doc/garlic/commands/omega_hint.gif
share/doc/garlic/commands/papain1.jpg
share/doc/garlic/commands/papain2.jpg
share/doc/garlic/commands/pat.html
share/doc/garlic/commands/patterns.gif
share/doc/garlic/commands/pau.html
share/doc/garlic/commands/phipsi.gif
share/doc/garlic/commands/pla.html
share/doc/garlic/commands/plane1.jpg
share/doc/garlic/commands/plane2.jpg
share/doc/garlic/commands/plane3.jpg
share/doc/garlic/commands/plo.html
share/doc/garlic/commands/plot1.gif
share/doc/garlic/commands/plot2.gif
share/doc/garlic/commands/plot3.gif
share/doc/garlic/commands/plot_eq1.gif
share/doc/garlic/commands/plot_eq2.gif
share/doc/garlic/commands/pos.html
share/doc/garlic/commands/prepro_hint.gif
share/doc/garlic/commands/pro.html
share/doc/garlic/commands/pro_hint.gif
share/doc/garlic/commands/probes.gif
share/doc/garlic/commands/rad.html

The first 100 are listed.

distinfo 2

File

Size

SHA256

garlic-1.6.tar.gz

559663

c99da419cb022d7120074baeaf922b3c66223fb7e78ef932e5a254fd6e0a0c8b

garlic-1.6-doc.tar.gz

1.210063e+06

747dcea06f3f771941a4d506c744212bfdc6f89053faa5bd1f14bc9274f3f2aa

Master sites 1

http://www.zucic.org/sources/garlic-1.6/

Commit history 0

No commits in the history this site was built from.