BSD Portsbiology/gcta 1.94.1_6 FreeBSD
Genome-wide Complex Trait Analysis
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- Last update
- Commit
2414383046- License
- GPLv3
- Categories
- biology
- Package size
- 1358.1 KiB, 3315.3 KiB installed
Description
GCTA (Genome-wide Complex Trait Analysis) was originally designed to estimate the proportion of phenotypic variance explained by genome- or chromosome-wide SNPs for complex traits (the GREML method), and has subsequently extended for many other analyses to better understand the genetic architecture of complex traits.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/gcta | 1.94.1_6 |
| NetBSD | wip/gcta | 1.94.1 |
| HardenedBSD | biology/gcta | 1.94.1_6 |
| GhostBSD | biology/gcta | 1.94.1_6 |
Install
Binary package:
pkg install gctaFrom the ports tree:
cd /usr/ports/biology/gcta/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= gcta>0:biology/gctaPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 1.94.1_6 | 1.94.1_6 | - | - | 1.94.1_6 |
| FreeBSD:14:quarterly | 1.94.1_6 | 1.94.1_6 | n/a | - | 1.94.1_6 |
| FreeBSD:15:latest | 1.94.1_6 | 1.94.1_6 | n/a | - | 1.94.1_3 |
| FreeBSD:15:quarterly | 1.94.1_6 | 1.94.1_6 | n/a | n/a | n/a |
| FreeBSD:16:latest | 1.94.1_6 | 1.94.1_6 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
As this port's Makefile names them.
Build 2
boost-libs>0: devel/boost-libsspectra>0: math/spectra
Library 4
libgsl.so: math/gsllibopenblas.so: math/openblaslibsqlite3.so: databases/sqlite3libzstd.so: archivers/zstd
The full lists below include those, and their dependencies in turn.
Build dependencies 34
- archivers/liblz4
- archivers/zstd
- databases/sqlite3
- devel/binutils
- devel/boost-libs
- devel/cmake-core
- devel/gettext-runtime
- devel/icu
- devel/jsoncpp
- devel/libedit
- devel/libffi
- devel/libunistring
- devel/libuv
- devel/ninja
- devel/readline
- dns/libidn2
- lang/gcc14
- lang/python312
- lang/tcl86
- math/blas
- math/eigen3
- math/gmp
- math/gsl
- math/lapack
- math/libtommath
- math/mpc
- math/mpdecimal
- math/mpfr
- math/openblas
- math/spectra
- ports-mgmt/pkg
- print/indexinfo
- security/rhash
- textproc/expat2
Run dependencies 14
No port depends on this one.
Configuration
No options to configure.
- USES
- cmake eigen:3 localbase:ldflags
- Service scripts
- none
Files
distinfo 2
| File | Size | SHA256 |
|---|---|---|
| jianyangqt-gcta-v1.94.1_GH0.tar.gz | 1.101577e+06 | d38841587bef016d7885cc1b3287d7ed0373bd370674130e814e2c5e6a90bfbf |
| zhilizheng-plink-ng-3744540_GH0.tar.gz | 3.222588e+06 | dfa4879bc6bcbe24411451748c7c5dc803e42cafa55b008134f0d123cd933222 |