biology/gff2ps 0.98l

Convert gff-formatted genomic data sets to PostScript

Repository: FreeBSD ports
Maintainer: [email protected]
License: GPLv2+
Categories: biology
Package size: 153.6 KiB, 787.9 KiB installed

Description

gff2ps is a script program developed with the aim of converting gff-formatted records into high quality one-dimensional plots in PostScript. Such plots maybe useful for comparing genomic structures and to visualizing outputs from genome annotation programs.

Install

As a binary package — by origin, or by package name:

pkg install biology/gff2ps
pkg install gff2ps

From the ports tree:

cd /usr/ports/biology/gff2ps/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	gff2ps>0:biology/gff2ps

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repository	aarch64	amd64	armv6	armv7	i386
FreeBSD:14:latest	0.98l	0.98l	0.98l	0.98l	0.98l
FreeBSD:14:quarterly	0.98l	0.98l	n/a	0.98l	0.98l
FreeBSD:15:latest	0.98l	0.98l	n/a	0.98l	0.98l
FreeBSD:15:quarterly	0.98l	0.98l	n/a	n/a	n/a
FreeBSD:16:latest	0.98l	0.98l	n/a	n/a	n/a
FreeBSD:16:quarterly	n/a	n/a	n/a	n/a	n/a

Repository

aarch64

amd64

armv6

armv7

i386

FreeBSD:14:latest

0.98l

FreeBSD:14:quarterly

0.98l

n/a

0.98l

FreeBSD:15:latest

0.98l

n/a

0.98l

FreeBSD:15:quarterly

0.98l

n/a

FreeBSD:16:latest

0.98l

n/a

FreeBSD:16:quarterly

n/a

Dependencies

As this port's Makefile names them.

Runtime 2

gawk : lang/gawk
bash : shells/bash

The full lists below include those, and their dependencies in turn.

All run dependencies 5

No port depends on this one.

Configuration

Options name: biology_gff2ps

Option	Default	Description
DOCS	off	Build and/or install documentation

Option

Default

Description

DOCS

off

Build and/or install documentation

Service scripts: none

Message after installing

===>   NOTICE:

The gff2ps port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://docs.freebsd.org/en/articles/contributing/#ports-contributing

Files

distinfo 2

File	Size	SHA256
gff2ps_v0.98l.gz	48424	9846ecfe10fa627c33cb8569ef795bfad153a1c0af492f0c9135cb5fad3ef39b
MANUAL_GFF2PS_v0.96.ps.gz	139407	eac552a4acc18a9c91d02233921ba0128d7a123c421909e02ab7be2bf716cb56

File

Size

SHA256

gff2ps_v0.98l.gz

48424

9846ecfe10fa627c33cb8569ef795bfad153a1c0af492f0c9135cb5fad3ef39b

MANUAL_GFF2PS_v0.96.ps.gz

139407

eac552a4acc18a9c91d02233921ba0128d7a123c421909e02ab7be2bf716cb56

Master sites 2

ftp://genome.crg.es/pub/gff_tools/gff2ps/
http://genome.crg.es/software/gfftools/gff2ps_docs/manual/:doc

Commit history 0

No commits in the history this site was built from.