BSD Ports

biology/graphlan 1.1.3_1 FreeBSD

High-quality circular representations of taxonomic, phylogenetic trees

System
FreeBSD
Repository
FreeBSD ports
Maintainer
[email protected]
License
MIT
Categories
biology
Package size
54.1 KiB, 289.5 KiB installed

Description

GraPhlAn is a software tool for producing high-quality circular representations of taxonomic and phylogenetic trees. GraPhlAn focuses on concise, integrative, informative, and publication-ready representations of phylogenetically- and taxonomically-driven investigation.

In the other systems

SystemPortVersion
FreeBSDbiology/graphlan1.1.3_1
DragonFlybiology/graphlan1.1.3_1

Install

Binary package:

pkg install graphlan

From the ports tree:

cd /usr/ports/biology/graphlan/ && make install clean

To depend on this port in another port's Makefile:

RUN_DEPENDS=	graphlan>0:biology/graphlan

Packages

The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.

Repositoryaarch64amd64armv6armv7i386
FreeBSD:14:latest1.1.3_11.1.3_11.1.3_11.1.3_11.1.3_1
FreeBSD:14:quarterly1.1.3_11.1.3_1n/a1.1.3_11.1.3_1
FreeBSD:15:latest1.1.3_11.1.3_1n/a1.1.3_11.1.3_1
FreeBSD:15:quarterly1.1.3_11.1.3_1n/an/an/a
FreeBSD:16:latest1.1.3_11.1.3_1n/an/an/a
FreeBSD:16:quarterlyn/an/an/an/an/a

Dependencies

The Makefile names none itself; they come from USES and USE_*.

The full lists below include those, and their dependencies in turn.

Build dependencies 7
Run dependencies 7

No port depends on this one.

Configuration

No options to configure.

USES
python shebangfix
Service scripts
none

Files

pkg-plist 67
  • bin/graphlan
  • bin/graphlan_annotate
  • share/graphlan/export2graphlan/.hg_archival.txt
  • share/graphlan/export2graphlan/.hgsub
  • share/graphlan/export2graphlan/.hgsubstate
  • share/graphlan/export2graphlan/README.md
  • share/graphlan/export2graphlan/export2graphlan.py
  • share/graphlan/export2graphlan/license.txt
  • share/graphlan/export2graphlan/todo-list.txt
  • share/graphlan/graphlan.py
  • share/graphlan/graphlan_annotate.py
  • share/graphlan/pyphlan/.hg_archival.txt
  • share/graphlan/pyphlan/__init__.py
  • share/graphlan/pyphlan/bo6_screen.py
  • share/graphlan/pyphlan/choco_postprocess_euks.py
  • share/graphlan/pyphlan/choco_postprocess_viruses.py
  • share/graphlan/pyphlan/choco_profile.py
  • share/graphlan/pyphlan/choco_summary.py
  • share/graphlan/pyphlan/conv_cg2cgs.py
  • share/graphlan/pyphlan/conv_cg2mg.py
  • share/graphlan/pyphlan/conv_ctxt2coretxt.py
  • share/graphlan/pyphlan/conv_ctxt2mat.py
  • share/graphlan/pyphlan/conv_ctxt2rxl.py
  • share/graphlan/pyphlan/conv_ctxt2ttxt.py
  • share/graphlan/pyphlan/conv_ctxt2txt.py
  • share/graphlan/pyphlan/conv_fna2rxl.py
  • share/graphlan/pyphlan/conv_t2g_2_g2t.py
  • share/graphlan/pyphlan/conv_tid2tax.py
  • share/graphlan/pyphlan/conv_txt2ls.py
  • share/graphlan/pyphlan/conv_uc2txt.py
  • share/graphlan/pyphlan/fna_exact_matches.py
  • share/graphlan/pyphlan/fna_extract_from_bo6.py
  • share/graphlan/pyphlan/fna_extract_from_primersearch.py
  • share/graphlan/pyphlan/fna_extract_with_primers.py
  • share/graphlan/pyphlan/fna_g2r.py
  • share/graphlan/pyphlan/fna_len.py
  • share/graphlan/pyphlan/fna_revcomp.py
  • share/graphlan/pyphlan/fna_sss.py
  • share/graphlan/pyphlan/fna_t2g.py
  • share/graphlan/pyphlan/libsvm_cv.py
  • share/graphlan/pyphlan/license.txt
  • share/graphlan/pyphlan/merg_ctxt.py
  • share/graphlan/pyphlan/mlst_table2fna.py
  • share/graphlan/pyphlan/msg.py
  • share/graphlan/pyphlan/pyphlan.py
  • share/graphlan/pyphlan/tab.py
  • share/graphlan/pyphlan/tab.pyc
  • share/graphlan/pyphlan/tab_sel_cols.py
  • share/graphlan/pyphlan/tab_sub.py
  • share/graphlan/pyphlan/tree_cores.py
  • share/graphlan/pyphlan/tree_get_leaves.py
  • share/graphlan/pyphlan/tree_get_subtrees.py
  • share/graphlan/pyphlan/tree_markers.py
  • share/graphlan/pyphlan/tree_pairwisedists.py
  • share/graphlan/pyphlan/tree_precision.py
  • share/graphlan/pyphlan/tree_prune.py
  • share/graphlan/pyphlan/tree_recall.py
  • share/graphlan/pyphlan/tree_rename.py
  • share/graphlan/pyphlan/tree_reroot.py
  • share/graphlan/pyphlan/tree_select_markers.py
  • share/graphlan/pyphlan/tree_subtree.py
  • share/graphlan/pyphlan/util_argparse.py
  • share/graphlan/pyphlan/utils.py
  • share/graphlan/readme.txt
  • share/graphlan/src/__init__.py
  • share/graphlan/src/graphlan_lib.py
  • share/graphlan/src/pyphlan.py
distinfo 3
FileSizeSHA256
graphlan-v1.1.3-66ec7cfce81e.tar.gz2.608529e+068931bb166ea46b761d3e1694ff164b82585d5d5ba751ca9cb093bc2fe91c1cb0
pyphlan-eae40ebc0030.tar.gz271395f9d8e9d8ca5d6c458ba8ce7a7bb2e4a2e9944dc36c6b04850cdcfa4efa046c6
export2graphlan-c168a100f37e.tar.gz5497437f2738154a9c33c6ab902cc43f498b0bc9a0d038e96154ca0eadef29bc631c6b
Master sites 3
  • https://bitbucket.org/nsegata/graphlan/get/66ec7cfce81e${EXTRACT_SUFX}?dummy=/
  • https://bitbucket.org/nsegata/pyphlan/get/eae40ebc0030${EXTRACT_SUFX}?dummy=/:pyphlan
  • https://bitbucket.org/CibioCM/export2graphlan/get/c168a100f37e${EXTRACT_SUFX}?dummy=/:e2g

Commit history 0

No commits in the history this site was built from.