BSD Portsbiology/lamarc 2.1.8_2,1 FreeBSD
Package of programs for computing population parameters
- System
- FreeBSD
- Repository
- FreeBSD ports
- Maintainer
- [email protected]
- License
- APACHE20
- Categories
- biology
- Package size
- 2898.8 KiB, 7487.0 KiB installed
Description
LAMARC (Likelihood Analysis with Metropolis Algorithm using Random Coalescence) is a package of programs for computing population parameters such as population size, population growth rate and migration rates. It does this by using likelihoods for samples of data (sequences, microsatellites, and electrophoretic polymorphisms) from populations.
In the other systems
| System | Port | Version |
|---|---|---|
| FreeBSD | biology/lamarc | 2.1.8_2,1 |
| DragonFly | biology/lamarc | 2.1.8_1,1 |
| HardenedBSD | biology/lamarc | 2.1.8_2,1 |
| GhostBSD | biology/lamarc | 2.1.8_2,1 |
Install
Binary package:
pkg install lamarcFrom the ports tree:
cd /usr/ports/biology/lamarc/ && make install cleanTo depend on this port in another port's Makefile:
RUN_DEPENDS= lamarc>0:biology/lamarcPackages
The version each package repository carries. “-” means the repository builds no package of it, “n/a” that there is no such repository.
| Repository | aarch64 | amd64 | armv6 | armv7 | i386 |
|---|---|---|---|---|---|
| FreeBSD:14:latest | 2.1.8_2,1 | 2.1.8_2,1 | 2.1.8_1,1 | 2.1.8_2,1 | 2.1.8_2,1 |
| FreeBSD:14:quarterly | 2.1.8_2,1 | 2.1.8_2,1 | n/a | 2.1.8_2,1 | 2.1.8_2,1 |
| FreeBSD:15:latest | 2.1.8_2,1 | 2.1.8_2,1 | n/a | 2.1.8_2,1 | 2.1.8_2,1 |
| FreeBSD:15:quarterly | 2.1.8_2,1 | 2.1.8_2,1 | n/a | n/a | n/a |
| FreeBSD:16:latest | 2.1.8_2,1 | 2.1.8_2,1 | n/a | n/a | n/a |
| FreeBSD:16:quarterly | n/a | n/a | n/a | n/a | n/a |
Dependencies
The Makefile names none itself; they come from USES and USE_*.
The full lists below include those, and their dependencies in turn.
No port depends on this one.
Configuration
Options name: biology_lamarc
| Option | Default | Description |
|---|---|---|
| DOCS | off | Build and/or install documentation |
| WXGTK | off | wxGTK GUI toolkit support |
- Service scripts
- none
Files
distinfo 1
| File | Size | SHA256 |
|---|---|---|
| lamarc-2.1.8-src.tar.gz | 2.491962e+07 | 73ca99a87c5d40577c3d3fbc25b72e3507bfce22f5376dfec90fd3a90b085281 |
Master sites 1
- http://evolution.genetics.washington.edu/lamarc/download/
Commit history 0
No commits in the history this site was built from.